PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011100292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 442aa MW: 50155 Da PI: 7.7456 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.8e-07 | 7 | 31 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC+ ++r G C++ C+FaHg+ XP_011100292.1 7 YKTKLCMLYQR-GRCSR-QYCNFAHGE 31 9**********.*****.*******96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-10 | 3 | 35 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.69E-5 | 4 | 35 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.007 | 6 | 31 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.296 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-4 | 7 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 442 aa Download sequence Send to blast |
MVEKKLYKTK LCMLYQRGRC SRQYCNFAHG EAELRRSFNG RQEYRGGRDL RERLDRMRSP 60 LHNSPGRGDT KARYSSHVAG DSPRSPGKRI DRNNRKRKQL DGHSDYSGRM SDGTEDQIRD 120 RRQTSSDTKM RIDEQLRELH SEIKMLESDK RQLEVYLEDK VKEADALTLK IHELEMQVSK 180 EKEEGKRFTT KIKKFIKAHN RHLRLQDDLK RSHAQLLKLG EQLDLDAAGP GNADDLKINN 240 TSDDIVGGYA LSPLNEDHMN SSPHRKRSRV TLEARDISNR VNPAGERAEI GKMRVEKLSR 300 RSENRDQVSN SRKPEADRDA YNGRGPLAYE DKSRRGTNLP ADIASADKYK VSETGLLLPS 360 TGIAAHAMDE DVEVVETEDK LPAGVAASTG DETEVTLKGS RLPFLPPPPP PIPQDVYLQY 420 KGDDENVDVD GVDEETVEVD IV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011100292.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100292.1 | 0.0 | zinc finger CCCH domain-containing protein 13 isoform X1 | ||||
TrEMBL | A0A2G9HLC7 | 0.0 | A0A2G9HLC7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00396.1.p | 1e-175 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6123 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21810.1 | 1e-36 | C3H family protein |