PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YB | ||||||||
Protein Properties | Length: 254aa MW: 28705.6 Da PI: 6.0358 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 178.7 | 5.3e-56 | 89 | 184 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd+lwa+ tlGfedyv+plk+yl+kyre+ege XP_011099714.1 89 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAIMTLGFEDYVNPLKLYLTKYREIEGE 183 89*******************************************************************************************99 PP NF-YB 97 k 97 k XP_011099714.1 184 K 184 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.1E-52 | 82 | 197 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.17E-39 | 91 | 191 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.4E-28 | 94 | 158 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.5E-19 | 122 | 140 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 125 | 141 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.5E-19 | 141 | 159 | No hit | No description |
PRINTS | PR00615 | 2.5E-19 | 160 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MKRERDNIDD DDDQRPPVGP NRTTFRISPE STCSNINNDS NHNPPIPPTT TININNNNNN 60 VVSANANANK GTSISNSSNN SNNNNHNNKE QDRFLPIANV GRIMKKVIPG NGKISKDAKE 120 TVQECVSEFI SFVTGEASDK CQREKRKTIN GDDILWAIMT LGFEDYVNPL KLYLTKYREI 180 EGEKLNVPKQ QRVEQRLQHE QSSSVPYNSV YSTTNMMSQP SFVSNDPPFP LPFSQNSIQT 240 TTTLPQQDHV DEHW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-44 | 89 | 179 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-44 | 89 | 179 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099714.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ076978 | 3e-58 | KJ076978.1 Sesamum indicum clone TilSSR_48179 microsatellite Sesame_48179 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099714.1 | 0.0 | nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | A0A2G9HQX5 | 1e-113 | A0A2G9HQX5_9LAMI; CCAAT-binding factor, subunit A (HAP3) | ||||
STRING | PGSC0003DMT400043176 | 7e-86 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 6e-64 | nuclear factor Y, subunit B7 |