PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099589.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 24936.9 Da PI: 5.125 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5.2e-20 | 58 | 110 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F +++++ e+ +LA++lgL+ rqV vWFqNrRa++k XP_011099589.1 58 KRKLSEEQVNMLERSFGSEHKLESERADRLAAELGLDPRQVAVWFQNRRARWK 110 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117 | 1e-37 | 57 | 148 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv++LE+sF +e+kLe+er +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ + e++rLe+e +L+e+l+e XP_011099589.1 57 RKRKLSEEQVNMLERSFGSEHKLESERADRLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHETAVVEKCRLETELLKLKEQLQE 148 8****************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.568 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-18 | 55 | 116 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-18 | 57 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.57E-16 | 57 | 113 | No hit | No description |
Pfam | PF00046 | 2.7E-17 | 58 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-20 | 59 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.0E-5 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.0E-5 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MNPEEVDDQM VLISQYYPDG IYSQFVPEQG AAMNSKPRRR RKKNKGDRGG AGDGVMRKRK 60 LSEEQVNMLE RSFGSEHKLE SERADRLAAE LGLDPRQVAV WFQNRRARWK SKKLEEEYSK 120 LKSEHETAVV EKCRLETELL KLKEQLQEAE KEIHRLSERW DGVSSNSPSS SFSIEAMDPP 180 FLGEFGMEGL GNVFYVPEAE ENYAQGLEWN TFYYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 59 | RKKNKGDRGGAGDGVMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099589.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099589.2 | 1e-158 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | Q9ZU70 | 3e-71 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A2G9G261 | 1e-102 | A0A2G9G261_9LAMI; Transcription factor HEX | ||||
STRING | Solyc02g085630.2.1 | 6e-90 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 5e-38 | homeobox protein 40 |
Publications ? help Back to Top | |||
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