PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011099213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 360aa MW: 40313.5 Da PI: 7.1133 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.9 | 9.9e-33 | 239 | 294 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_011099213.1 239 KQRRCWSPELHKRFVDALQHLGGAQTATPKQIRELMKVDGLTNDEVKSHLQKYRLH 294 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-30 | 236 | 297 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.56E-19 | 236 | 297 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.457 | 236 | 296 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.3E-27 | 239 | 294 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-7 | 241 | 292 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MGFEKKMGEN SRQLNLDVGS IFVPKTISDI LTEVSMMHDF SKKSSKLDFY VHSLEEEMRK 60 VDAFKRELPH CMQLLRDAIE TLKKESLRWK GREMGPVMEE FIPLKGDSEG GGRAKLSTDF 120 SEKKNWMSSV QLWSTPVHYE NQDSVLSLRS RHQEEEGSGI DSQFQGCNNI KNSGGAFLPF 180 KKAPGLSIKE QKRDSASAVN GGLSLSIPVA ELELESESPD LISVKEPSAF LRPQLQQRKQ 240 RRCWSPELHK RFVDALQHLG GAQTATPKQI RELMKVDGLT NDEVKSHLQK YRLHIRKLPS 300 TSGGTRDFSW VAQELPNKQM VAHSGSPQDH LNLGGSAKRG SGSAIGGDSM EEDEDDKCES |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-15 | 239 | 296 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00475 | DAP | Transfer from AT4G37180 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011099213.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ123021 | 1e-124 | HQ123021.1 Sesamum indicum clone SiMS54 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099213.1 | 0.0 | myb family transcription factor EFM isoform X1 | ||||
TrEMBL | A0A1S4BGB3 | 1e-109 | A0A1S4BGB3_TOBAC; uncharacterized protein LOC107807956 | ||||
STRING | XP_009796235.1 | 1e-110 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8497 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37180.1 | 1e-56 | G2-like family protein |