PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011099003.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

WRKY

Protein Properties

Length: 187aa MW: 21249.9 Da PI: 9.8935

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011099003.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.7	1.1e-33	106	164	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d ++v++tYeg H+h+ XP_011099003.1 106 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLSTDASIVVTTYEGMHTHP 164 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-35	91	165	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-30	98	165	IPR003657	WRKY domain
PROSITE profile	PS50811	30.664	101	166	IPR003657	WRKY domain
SMART	SM00774	1.1E-40	106	165	IPR003657	WRKY domain
Pfam	PF03106	1.7E-27	107	164	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MENNIHPRFS GINSSTDHGT TASSLSPDHM MMMTSSLYNS GNLDGFVGFK RPEVHHPAAQ 60 VGDEGPYING NNETKLLVGS SGKKNGEKKI RKPRFAFQTR SQVDILDDGY RWRKYGQKAV 120 KNNKFPRSYY RCTYQGCNVK KQVQRLSTDA SIVVTTYEGM HTHPVEKPTD NFEQILNQMH 180 IYPLSFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-28	96	163	7	74	Probable WRKY transcription factor 4
2lex_A	2e-28	96	163	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011099003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099003.1	1e-141	probable WRKY transcription factor 75
TrEMBL	A0A2G9HPG3	5e-75	A0A2G9HPG3_9LAMI; Uncharacterized protein
STRING	cassava4.1_023502m	7e-63	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2204	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	3e-55	WRKY DNA-binding protein 75