PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098643.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 362aa    MW: 41152.4 Da    PI: 9.7236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098643.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-16129174147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_011098643.1 129 RGHWRPSEDAKLRKLVALYGPQNWNLIAQKLE-GRSGKSCRLRWYNQ 174
                      899*****************************.************96 PP
2Myb_DNA-binding52.41.2e-16182225247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+ E+e+l +a++ +G++ W++I+r ++ gRt++ +k++w+ +
   XP_011098643.1 182 RAFTEAEEERLMEAHRVYGNR-WALISRLFP-GRTDNAVKNHWHVL 225
                      689******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.549124179IPR017930Myb domain
SuperFamilySSF466891.12E-27128222IPR009057Homeodomain-like
SMARTSM007174.4E-15128177IPR001005SANT/Myb domain
PfamPF002494.0E-16129175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-26130182IPR009057Homeodomain-like
CDDcd001672.21E-13132173No hitNo description
SMARTSM007171.0E-13180228IPR001005SANT/Myb domain
PROSITE profilePS5129420.702180230IPR017930Myb domain
PfamPF002494.7E-14182224IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-20183229IPR009057Homeodomain-like
CDDcd001671.90E-10183225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MQQHTATNLR QCHQEHAGFA AYKGSNFLID RTVLFPVLSM GFSADAFKDP VHVSEIKSKP  60
RGRGGSMDFS VMKGCNIRVS KDCSNNVQEE VEKAAMGGCS VNFSKINNGK NPSESCKRME  120
RGQTKFRARG HWRPSEDAKL RKLVALYGPQ NWNLIAQKLE GRSGKSCRLR WYNQLDPKIN  180
KRAFTEAEEE RLMEAHRVYG NRWALISRLF PGRTDNAVKN HWHVLTARKY REKPESYVKR  240
ECSTDQQPDL GRRSMEKCSS NSAANFAEMQ SYCGNQVSWS SNDHFIGGCD NKSWHMRRQI  300
EESSKHMHLS LPYSPVSTSE ISFAAPTSPA STWFADHYHG SSHFLQKTET PMFIDFLGVG  360
AI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-321292297107B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098643.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098643.20.0myb-related protein A-like isoform X2
TrEMBLA0A2G9GI201e-104A0A2G9GI20_9LAMI; Transcription factor, Myb superfamily
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-66myb domain protein 105