PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098601.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 281aa    MW: 32202 Da    PI: 6.5145
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.6e-1870123356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_011098601.1  70 KKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 123
                     4557899**********************************************9 PP
2HD-ZIP_I/II129.31.5e-4169160192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++alk++n++L++++++L+++l 
  XP_011098601.1  69 EKKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDMLKRQFEALKADNDALKSQNKKLQTQLL 160
                     69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-1961127IPR009057Homeodomain-like
SMARTSM003894.1E-1868129IPR001356Homeobox domain
PROSITE profilePS5007116.60169125IPR001356Homeobox domain
PfamPF000463.5E-1570123IPR001356Homeobox domain
CDDcd000866.77E-1670126No hitNo description
Gene3DG3DSA:1.10.10.602.7E-1972133IPR009057Homeodomain-like
PRINTSPR000311.1E-596105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5105121IPR000047Helix-turn-helix motif
PfamPF021831.9E-14125164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAFVPAESMF RNHEDSHFPS SSPCAPQDFH GVPEFLMRRS MSFSGMERPE DQLQPEDEMS  60
DDGSQLLGEK KRRLNLEQVK ALEKSFELGN KLEPERKMQL ARALGLQPRQ IAIWFQNRRA  120
RWKTKQLEKD YDMLKRQFEA LKADNDALKS QNKKLQTQLL ALKTRDSTGS GAINLNKENE  180
GSWSNVSENS CEVNLNTTST DSTLYPHPHH HQTNKNPVIN FPSAIGPSSL TQLLQRPDHH  240
LQLCQKMDHA PVSNDGFGNM FGAGIEENQD FWPWPEQQNF N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098601.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098601.10.0homeobox-leucine zipper protein HOX21
SwissprotQ8LC039e-73ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
SwissprotQ8S7W91e-72HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A2G9G0R51e-143A0A2G9G0R5_9LAMI; Uncharacterized protein
STRINGMigut.H00906.1.p1e-117(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.19e-69HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]