PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011097229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 25025 Da PI: 6.2681 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.8e-20 | 63 | 115 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq + Le+ F +++++ e++e+LA++lgL+ rqV vWFqNrRa+++ XP_011097229.1 63 KRKLSEEQANMLEKSFGSEHKLESERKERLAAELGLDPRQVAVWFQNRRARWR 115 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 113.6 | 1.2e-36 | 62 | 153 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eq+++LE+sF +e+kLe+erK++la eLgl+prqvavWFqnrRAR+++k+lE+++++L++++d+ e++rLe+e +++e+l+e XP_011097229.1 62 RKRKLSEEQANMLEKSFGSEHKLESERKERLAAELGLDPRQVAVWFQNRRARWRSKKLEEEFSKLRSHHDSTLIEKSRLETELVKVKEQLQE 153 8****************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.006 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-19 | 60 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.27E-15 | 62 | 118 | No hit | No description |
Pfam | PF00046 | 8.1E-18 | 63 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-17 | 63 | 126 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 67 | 117 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.5E-6 | 88 | 97 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.5E-6 | 97 | 113 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MMINPEFDDQ MVLISGQYYP VGIISQFVQE QGAAVEESKP RRRRRKKNGG GGDGDGEAVM 60 MRKRKLSEEQ ANMLEKSFGS EHKLESERKE RLAAELGLDP RQVAVWFQNR RARWRSKKLE 120 EEFSKLRSHH DSTLIEKSRL ETELVKVKEQ LQEAEKEIQR LSERWDHGFS SNSPSSSTNM 180 EQPPLLGFEG LENVFCVPHD NSYGHGFEWD NFYYL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 40 | 46 | RRRRRKK |
2 | 44 | 64 | RKKNGGGGDGDGEAVMMRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011097229.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097229.1 | 1e-159 | homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 5e-60 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2G9G261 | 4e-85 | A0A2G9G261_9LAMI; Transcription factor HEX | ||||
STRING | Solyc02g085630.2.1 | 2e-72 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 5e-54 | homeobox protein 40 |
Publications ? help Back to Top | |||
---|---|---|---|
|