PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096748.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 422aa    MW: 46927.3 Da    PI: 8.9839
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1768127155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_011096748.1  68 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 127
                     57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-1768136IPR016177DNA-binding domain
PfamPF008476.3E-1368127IPR001471AP2/ERF domain
PROSITE profilePS5103220.12669135IPR001471AP2/ERF domain
SMARTSM003801.9E-2569141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1569136IPR001471AP2/ERF domain
PRINTSPR003674.2E-57081IPR001471AP2/ERF domain
PRINTSPR003674.2E-5117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASSSSDHAA KPEETGGGES SEAPPPPPLG SDQLLLYRGL KKAKKERGCT AKERISKMPP  60
CTAGKRSSIY RGVTRHRWTG RYEAHLWDKS TWNQNQNKKG KQVYLGAYDD EEAAARAYDL  120
AALKYWGPGT LINFPVTDYT RDLEEMQNVS REDYLASLRR KSSGFSRGIS KYRPLSSRWD  180
SQFGRTPGTD YTKSALYGAG DEMTTGSEYA GGYSADRKID LSNYIKWWGP NKSSQTDFRS  240
KALDETNIGG PDDVASELKS LEWSIKPTEP YEMPRLGVSP ERMKHKKISA MSILLKSAAY  300
KSLQEKISKK KEKDENDENE NKNNTDKVEL GKAADKSCHD VGSERHSAAY GISGGLPIHR  360
NMYPLAPLLS APLLTSYNSI DPLTDPILWS SLVPVLPTGS SRTNEVTKNE SSSDYTFFQQ  420
GE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096748.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-156AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0G2SJP00.0A0A0G2SJP0_SALMI; AP9/EREBP Transcription Factors
STRINGMigut.M01946.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-135AP2 family protein