PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011095255.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 377aa MW: 42184.1 Da PI: 9.28 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 115.3 | 3.7e-36 | 169 | 259 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqr+wse+Deiv+LqG+id+ +k++++p++d++af++f+kk+++++++++ql +KirrLK+K++++++k +++fsk+h+qk++elskkiW XP_011095255.1 169 LFQRVWSEDDEIVILQGMIDYVTKKKSDPVADLNAFHDFIKKNLHADMTRTQLQDKIRRLKRKYQNNKSK-----DKTFSKPHEQKAYELSKKIW 258 69*****************************************************************999.....99****************** PP DUF573 97 g 97 g XP_011095255.1 259 G 259 8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.6E-32 | 170 | 259 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 377 aa Download sequence Send to blast |
MAKNREPEKP VESETESGEE EDSEDAGSQD SDSEPDLAQV SKKPSSSTQA TPKKAQPQSS 60 SKPQPQPQPQ PQPPSSSDEE ESGFDSDESD PNVKPIASKP MENEQKSTDG ARKLRSKPIA 120 SDLVTPAKST AAKRPAEEKE TDAKDAKKKK KAKPDTTEKK STDDSKKLLF QRVWSEDDEI 180 VILQGMIDYV TKKKSDPVAD LNAFHDFIKK NLHADMTRTQ LQDKIRRLKR KYQNNKSKDK 240 TFSKPHEQKA YELSKKIWGN ESGKENGVEK LMGNGSALRK NRGKRPNTVE NEEAKDVNSD 300 PERLLPAKRV NSGGVTVEER IWRIGAEYFE SGKGLEGEKE WKKLKVEEME VNLRQLEVKT 360 AQAKLVLDAV KSGSLKL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011095255.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095255.1 | 0.0 | GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | A0A2Z7D2M7 | 1e-108 | A0A2Z7D2M7_9LAMI; Mediator-associated protein 1 | ||||
STRING | Migut.M01263.1.p | 1e-109 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3042 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00390.1 | 2e-28 | DNA-binding storekeeper protein-related transcriptional regulator |