PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094902.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 308aa    MW: 34372.4 Da    PI: 7.4798
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_011094902.1 59 YSCSFCRREFRSAQALGGHMNVH 81
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.5E-65685No hitNo description
PROSITE profilePS5015711.2195986IPR007087Zinc finger, C2H2
SMARTSM003550.00985981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEQARYWNIW AKRKPDSNTH HILAPAAAMN SYGDSWEEQA FAEDAAGTLG GCVWPPRSYS  60
CSFCRREFRS AQALGGHMNV HRRDRARLKQ SSISPTEVVP QNHALNTCAS FDAPYSSQIC  120
TFSYNNPNPE FSDRGQLVST PSSHVIRVSS PPATKVINSE EKMSTLCFFS PLVQKTHKEN  180
IVSSHPPSWS SFVAGKRDHD LGSVKNHEEN KSTTVEPDSR AEKEDCVTED LSMSLNLVVC  240
RAQTNTSSDE EVASCKRRRI EEKPLSFFPK LSRTVDRCVS PSEVLKLRPG SAEDLDLELR  300
LGDAPKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125481229superman protein
2l1o_A1e-125481229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255259KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094902.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094902.10.0zinc finger protein 10
TrEMBLA0A2G9H6391e-131A0A2G9H639_9LAMI; Uncharacterized protein
STRINGMigut.J00299.1.p1e-83(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-27C2H2 family protein