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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011094643.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB_related | ||||||||
Protein Properties | Length: 597aa MW: 66747.9 Da PI: 7.2588 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.9e-09 | 472 | 519 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E ++l+d+v+++G g+W++I + + +Rt ++k++w+++l XP_011094643.1 472 WTIAEVKKLIDGVAEYGVGRWSRIKKLFFsasAHRTSVDLKDKWRNLL 519 9*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-13 | 463 | 522 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.793 | 464 | 523 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.45E-16 | 466 | 521 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-9 | 468 | 521 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.40E-20 | 472 | 520 | No hit | No description |
Pfam | PF00249 | 2.3E-7 | 472 | 519 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MENGPPTIGF EDGTIDVERL LVEPQDGHVS VDSVMCFNDI AENAMEMEEV SRHFGVPNTA 60 VSQECGEDIL NGDVLDSMRE VEVGYFRMQN DFCSMGEEYL LGVEFAESIT NLDYGSSEGL 120 QTSVSDSPVL ASAAVTDTPW KADLFRAMEV PECQNHQLNA DSSRFGEISD PCHKSETFVE 180 EEEPSKSPTS CALQDMGKFH DISSCSFQDI LDENDTSLSP SVDMLHSPKN EKSSEFGGLT 240 GQTGEIKRFL GRDALVTTSA PASHTNTFPT PKRSRKPTQR YIDELADPLS RHSKKRREVS 300 SSKSLGVKDH KKCRLGPRAI RLPAEESSVK AIQVPFGSLV QNECPESCAY DMVRSSDRGN 360 LMTKSKDSRI SSENQKKKDV FAGAIHLKKR DDSVSAATQK KRDDNVAAVH LKKREDNVTA 420 VHIKKRDDNI TAVSPKKPDD CDATVRQKKR DDYLTAESSE EVNGRRKHHR LWTIAEVKKL 480 IDGVAEYGVG RWSRIKKLFF SASAHRTSVD LKDKWRNLLK ASGIQSQGSR QGEKKRNMAW 540 RPLPKSILRR VCELATIYPY PKGRKTKIAH IHHDSPDRST DITLGDYRRI LRSINGN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 463 | 470 | GRRKHHRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011094643.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094643.1 | 0.0 | uncharacterized protein LOC105174291 isoform X1 | ||||
TrEMBL | A0A0K1SB99 | 0.0 | A0A0K1SB99_REHGL; Telomere repeat-binding factor like-protein | ||||
STRING | Migut.L01689.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9155 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 4e-26 | TRF-like 6 |