PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093606.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CPP
Protein Properties Length: 611aa    MW: 66705.8 Da    PI: 8.3056
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.41.6e-14132171242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  XP_011093606.1 132 KQKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCHNNVEN 171
                     89**************************.********9875 PP
2TCR51.22.6e-16216255140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_011093606.1 216 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 255
                     589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.7E-17131171IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.223132256IPR005172CRC domain
PfamPF036382.5E-11133168IPR005172CRC domain
SMARTSM011146.2E-20216257IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-12219254IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MEQSEGGDFP PKKQPPPPQS EASSTAGVDF PARKLVRQLD FTGFSGGASS VEQPQVVKPS  60
QQPPLPQLVK PSQPTKPPHL QPPQMLFMAM QQPPQPAAPP THPSIRPLVK PESPRSRPRQ  120
GVNEVKDGTP KKQKQCNCKH SRCLKLYCEC FASGTYCDGC NCVNCHNNVE NEAARREAVE  180
ATLERNPNAF RPKIASSPHG ARDNREEAAE GLVSGKHNKG CHCKKSGCLK KYCECFQANI  240
LCSENCKCMD CKNYEGSEER QALFHGDHAN NMAYIQQAAN AAITGAIGSS GYGSPPFNKK  300
RKGQDLFFGS TKDPVHKLGQ LQQPNHIKAS LPSSSSSSIP VARSGNASGL GPSKFTYRSL  360
LADIIQPQDL KELCSVLVVY SGEAAKMLAE ERNEAQKRAG DSRETSLASS TQDECQSQKQ  420
SVAESALTHY PSFENQTEKT RPQESGSDGA DVSKGRPMSP STLALMCDEQ DTVFTTAASP  480
NRLEVQNNLS SQLPLEQGMT EAYAEQERIV LTKFRDCLNR LITLGEIKET KYSSLARTVS  540
ANEKDLTSND TSNVRTETRN QQLISNGVTI HRQRTSAIVT QTASAVHNIP SIRAITPAEN  600
GDVRTKRERD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-311242652132Protein lin-54 homolog
5fd3_B1e-311242652132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093606.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755243e-66HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093606.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2G9GSN40.0A0A2G9GSN4_9LAMI; Metallothionein-like protein
STRINGMigut.K00502.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-173Tesmin/TSO1-like CXC domain-containing protein