PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092605.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRF

Protein Properties

Length: 365aa MW: 39663 Da PI: 8.0866

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.8	2.2e-24	90	134	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ XP_011092605.1 90 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 134 79****************************************986 PP
2	QLQ	66	8.8e-23	29	64	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++ XP_011092605.1 29 PFTAVQWQELEHQAMIYKYLVAGLPVPPDLVMPIRR 64 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.4E-13	28	64	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.5E-17	29	63	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.828	29	64	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.831	90	134	IPR014977	WRC domain
Pfam	PF08879	6.8E-21	91	133	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MSGTASTSVA VGLGIGGGGE MGYGGYRAPF TAVQWQELEH QAMIYKYLVA GLPVPPDLVM 60 PIRRSFEALS ARFFHHPSLG YCSYYGKKFD PEPGRCRRTD GKKWRCSKDA HPDSKYCERH 120 MHRGRNRSRK PVESQSNSQP MSTAMSHISS GCGSNSGSFQ VSGSGSFQNM PLYSVVNSEG 180 SSFGSNVTKL QMEPISYGID NKEFRYVHGL TPDADDHSFS PEVSGSVGSL GLGSCAGTGS 240 WRLMPSQVPS SSLLKQKSDS LLLGPSSTQQ NMPHAFEPIT TTASKQRQQH CFLGNEIGSP 300 GAVKQEQHPV HPFFSEWPTT KESWSTLDDD DGSNKNVFSS TQLSISIPRA SSDFSSRAAY 360 SQNDA

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MSGTASTSVA VGLGIGGGGE MGYGGYRAPF TAVQWQELEH QAMIYKYLVA GLPVPPDLVM  60
PIRRSFEALS ARFFHHPSLG YCSYYGKKFD PEPGRCRRTD GKKWRCSKDA HPDSKYCERH  120
MHRGRNRSRK PVESQSNSQP MSTAMSHISS GCGSNSGSFQ VSGSGSFQNM PLYSVVNSEG  180
SSFGSNVTKL QMEPISYGID NKEFRYVHGL TPDADDHSFS PEVSGSVGSL GLGSCAGTGS  240
WRLMPSQVPS SSLLKQKSDS LLLGPSSTQQ NMPHAFEPIT TTASKQRQQH CFLGNEIGSP  300
GAVKQEQHPV HPFFSEWPTT KESWSTLDDD DGSNKNVFSS TQLSISIPRA SSDFSSRAAY  360
SQNDA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092605.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY303170	6e-51	AY303170.1 Solanum bulbocastanum chromosome 8 clone UW3A14, complete sequence.
GenBank	AY303171	6e-51	AY303171.1 Solanum bulbocastanum chromosome 8 clone UW177O13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092605.1	0.0	growth-regulating factor 4-like isoform X2
TrEMBL	A0A2G9HFT5	0.0	A0A2G9HFT5_9LAMI; Uncharacterized protein
STRING	Solyc08g075950.1.1	1e-176	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA743	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	7e-48	growth-regulating factor 5