PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092175.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GeBP

Protein Properties

Length: 397aa MW: 43473.2 Da PI: 4.9788

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.7	4.7e-35	98	201	1	98
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 klfqrlw++eDei lLqG++d+++++ + ++d++afy+++k++ +++++k+qlveK+rrLKkK+++ +k sgk+ +f+++hdq +f XP_011092175.1 98 KLFQRLWTDEDEIELLQGFLDYTTQRCGphnssqQHHHDTTAFYDQIKSKFQLDFNKNQLVEKLRRLKKKYRNVINKFGSGKDYTFKSPHDQATF 192 579*****************9987544654545566***************************************************** PP DUF573 90 elskkiWgs 98 e+s+kiWgs XP_011092175.1 193 EISSKIWGS 201 *****95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.5E-33	100	200	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MASAGDPSAA AAAAGNIFNE DEDLLEDDDD DESSDHDEDD SASSAALAVD RPPPSTSAAQ 60 VTIAVPGIPD PLLITKQQQQ QETMITKKPA ALPDESRKLF QRLWTDEDEI ELLQGFLDYT 120 TQRCGPHNSS QQHHHDTTAF YDQIKSKFQL DFNKNQLVEK LRRLKKKYRN VINKFGSGKD 180 YTFKSPHDQA TFEISSKIWG SAAVNGSSAF RAAPAAIEED DDDLNTPNFA DCQSPNPNGI 240 DVNSKTPRPR KRNRAGVVKL EDKPHHAPVN SNINNNQSPA VVTPMAAPVV GAGITGSLST 300 VIEETVKSCL SPIFKELLSN SLNSNLNPSG PCCGHGFGLA RSPIPLCFAG ATVGGDRQTN 360 DRWRKQQILE LEVFSKRLEL VQDQIREQLQ ELRSMGN

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MASAGDPSAA AAAAGNIFNE DEDLLEDDDD DESSDHDEDD SASSAALAVD RPPPSTSAAQ  60
VTIAVPGIPD PLLITKQQQQ QETMITKKPA ALPDESRKLF QRLWTDEDEI ELLQGFLDYT  120
TQRCGPHNSS QQHHHDTTAF YDQIKSKFQL DFNKNQLVEK LRRLKKKYRN VINKFGSGKD  180
YTFKSPHDQA TFEISSKIWG SAAVNGSSAF RAAPAAIEED DDDLNTPNFA DCQSPNPNGI  240
DVNSKTPRPR KRNRAGVVKL EDKPHHAPVN SNINNNQSPA VVTPMAAPVV GAGITGSLST  300
VIEETVKSCL SPIFKELLSN SLNSNLNPSG PCCGHGFGLA RSPIPLCFAG ATVGGDRQTN  360
DRWRKQQILE LEVFSKRLEL VQDQIREQLQ ELRSMGN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092175.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552957.1	0.0	probable transcription factor At3g04930
TrEMBL	A0A2G9HBP4	0.0	A0A2G9HBP4_9LAMI; Uncharacterized protein
STRING	Migut.N01941.1.p	1e-174	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-77	DNA-binding storekeeper protein-related transcriptional regulator