PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011091423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 409aa MW: 45855.6 Da PI: 5.317 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.3e-13 | 202 | 253 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P++ + ++ + a+i A+e++++L+ XP_011091423.1 202 QRMTHIAVERNRRKQMNEHLRVLRSLMPSS---YVQRGDQASIIGGAIEFVRELE 253 79****************************...9*****************9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.86E-12 | 200 | 257 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.0E-14 | 200 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.288 | 201 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-16 | 201 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-10 | 202 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-9 | 207 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.551 | 335 | 409 | IPR002912 | ACT domain |
CDD | cd04873 | 0.00299 | 335 | 399 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010377 | Biological Process | guard cell fate commitment | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MAMLSCFEPN NLQGNFHGLD YISSLEVHNH QQQDLMKIGS TSADHNSNQM VDYMLNNPPH 60 TQPPPPLPSN FCSSNSFDKL SFADVMQFAD FGPKLALNQS KNSEEENGID PVYFLKFPVL 120 NEHKLQEDHD NPVSSLMASQ PLEENNQERE DKGVGGGGGD GENTSVQLRF LGENLDKSPL 180 AEAKSKRKRP RTLKTSEEVE SQRMTHIAVE RNRRKQMNEH LRVLRSLMPS SYVQRGDQAS 240 IIGGAIEFVR ELEQLLQCLE SQKRRRLYGD GQRPVGDPSM AIQQQPQAPL VFPPMPIPND 300 QVKFVEYESG LQEETAESKS CLADVEVKLL GFDALIKILS RRRPGQLIKT IAALEDLQLN 360 ILHTNITTIE QTVLYSFNVK IGGEARFTAE DIANSVQQIF SFIHANGSI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 213 | RMTHIAVERNRR |
2 | 262 | 266 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:17088607, PubMed:17183265, PubMed:17183267). Together with MYB88 and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Together with SPCH and MUTE, regulates the stomata formation. Required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Mediates the formation of stomata (PubMed:17088607, PubMed:17183265, PubMed:17183267). Prevents histone H3K27me3 marks and derepresses stem cell gene expression (PubMed:24654956). {ECO:0000269|PubMed:17088607, ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24654956}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011091423.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Inhibited by low relative humidity (LRH) via epigenetic CG methylation, thus leading to a reduced stomatal index. {ECO:0000269|PubMed:22442411}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM425576 | 3e-31 | AM425576.2 Vitis vinifera contig VV78X098456.7, whole genome shotgun sequence. | |||
GenBank | KM111498 | 3e-31 | KM111498.1 Vitis vinifera clone 3 FAMA (FAMA) gene, complete cds. | |||
GenBank | KM111499 | 3e-31 | KM111499.1 Vitis riparia clone 1 FAMA (E) (FAMA) gene, complete cds. | |||
GenBank | KM111500 | 3e-31 | KM111500.1 Vitis riparia clone 4 FAMA(E) (FAMA) mRNA, complete cds. | |||
GenBank | KM111501 | 3e-31 | KM111501.1 Vitis riparia clone 5 FAMAi1(E) (FAMA) mRNA, complete cds. | |||
GenBank | KM111502 | 3e-31 | KM111502.1 Vitis riparia clone 4 FAMA(L) (FAMA) mRNA, complete cds. | |||
GenBank | KM111503 | 3e-31 | KM111503.1 Vitis vinifera clone 1 FAMA(L) (FAMA) mRNA, complete cds. | |||
GenBank | KM111504 | 3e-31 | KM111504.1 Vitis riparia clone 2 FAMAi2(L) (FAMA) mRNA, complete cds. | |||
GenBank | KM111505 | 3e-31 | KM111505.1 Vitis vinifera clone 1 FAMAi2(L) (FAMA) mRNA, complete cds. | |||
GenBank | KM224875 | 3e-31 | KM224875.1 Vitis riparia clone 3 FAMA(E) (FAMA) gene, complete cds. | |||
GenBank | KM224876 | 3e-31 | KM224876.1 Vitis riparia clone 3 FAMA(E) (FAMA) mRNA, complete cds. | |||
GenBank | KM224877 | 3e-31 | KM224877.1 Vitis riparia clone 5 FAMA(L) (FAMA) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091423.1 | 0.0 | transcription factor FAMA isoform X3 | ||||
Swissprot | Q56YJ8 | 1e-143 | FAMA_ARATH; Transcription factor FAMA | ||||
TrEMBL | A0A0H3YC69 | 0.0 | A0A0H3YC69_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | cassava4.1_024031m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4657 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24140.1 | 1e-132 | bHLH family protein |