PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011091006.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRF
Protein Properties Length: 464aa    MW: 51081.4 Da    PI: 8.583
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011091006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.41.1e-22138182145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDG+kWRCs++v++ +k+CErH+hrgr+ srk++e+
  XP_011091006.1 138 DPEPGRCRRTDGRKWRCSKNVVPLQKYCERHMHRGRQGSRKHVET 182
                     79****************************************985 PP
2WRC52.58.5e-17355390338
             WRC   3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 
                     +  rCrRtDGKkW C+r++++ +k+CE H+hrg +r
  XP_011091006.1 355 QRQRCRRTDGKKWQCRRDAIPHQKYCEAHMHRGAKR 390
                     668******************************887 PP
3QLQ36.61.4e-1369104136
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                     s FTa Q++++ sQil+y  +a+++PvP +L ++++
  XP_011091006.1  69 SLFTALQFHEFHSQILIYNSIASGLPVPFHLFLPVW 104
                     68********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.7E-469105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166615.46770105IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-871104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.675138182IPR014977WRC domain
PfamPF088798.9E-19139181IPR014977WRC domain
PROSITE profilePS5166719.21353397IPR014977WRC domain
PfamPF088793.6E-14357390IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MHSQLLPAAI APPPAGDEDD SGDGLVIAEK REEDYPEKIN LDLGIGSCGC ANEGGLKRNK  60
RIKQEKKESL FTALQFHEFH SQILIYNSIA SGLPVPFHLF LPVWTSVFNS LGPAIYKKYP  120
SFIGISPENS GHSCSMMDPE PGRCRRTDGR KWRCSKNVVP LQKYCERHMH RGRQGSRKHV  180
ETIENVPRTD NKASDVNRMP VVSLVTSDID NGIANSIQSD LHPRQLCSNY SIGVPETVRS  240
DENCDALLAI KTTSAVGSLG NEVNKNINVD DATTSTSMSS NYNANAKGGH HTERKESSFK  300
NPNPGKISSK KHIVDRENYL GFISPRFGLS PKSVLHCAAG KVSLELGSKN VIETQRQRCR  360
RTDGKKWQCR RDAIPHQKYC EAHMHRGAKR FMLNPQFASD PLATSARMAG VSCNIGSSLD  420
NGINLNTIPA SPQHVNNSTS STSDATTITD ENISFCLNQS LHNC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011091006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091006.10.0growth-regulating factor 9
TrEMBLA0A2G9I1Z41e-175A0A2G9I1Z4_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.19e-34growth-regulating factor 9