PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090506.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CPP
Protein Properties Length: 404aa    MW: 44396.4 Da    PI: 7.7892
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR461e-144382242
             TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                    ++k+CnCk+s+Clk+YCeCfaag++C++ C+C +C+Nk e+
  XP_011090506.1 43 KQKQCNCKNSRCLKLYCECFAAGSYCDN-CNCINCHNKIEH 82
                    89*************************9.********9775 PP
2TCR52.41.1e-16119157240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +kkgCnCkks Clk+YCeCf+a+  Cs++CkC dCkN e
  XP_011090506.1 119 HKKGCNCKKSGCLKRYCECFQANILCSDKCKCMDCKNFE 157
                     89***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.1E-184282IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.07243158IPR005172CRC domain
PfamPF036381.1E-114479IPR005172CRC domain
SMARTSM011141.6E-18118159IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.4E-13120156IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVGLLKSKPI APRLAHPVKP VKTESPKSRE RCNIEPKDST PKKQKQCNCK NSRCLKLYCE  60
CFAAGSYCDN CNCINCHNKI EHEADRKGSI DAILERNPNA FTPKIANSPH GATDGGVEHK  120
KGCNCKKSGC LKRYCECFQA NILCSDKCKC MDCKNFEGSE EKKALSQGHP EHQLMSIQQA  180
ANAAINGAIG TPPSRKSRNH QIDFRETCST SYASCSPLSV HVSKLASSMT LESSKPSYRA  240
PLAGILQLQH VKDFCRLLVE VSAEAAKSLS EEKKMINSGI DVNVTETSVA SSHEDGKGDQ  300
NEHDSLGLCG NQENGLQILL SESDGSCIRN RRPLSPETLA LMCDEEDTVF LSTSTPPTTT  360
QSTLGLNPFY VEQERLVLMR FRSFLNRLIT CGCIEETKIG READ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-34351652130Protein lin-54 homolog
5fd3_B5e-34351652130Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090506.20.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-109TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2G9GAM41e-173A0A2G9GAM4_9LAMI; Uncharacterized protein
STRINGMigut.A00224.1.p1e-128(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-100Tesmin/TSO1-like CXC domain-containing protein