PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 363aa MW: 39982.9 Da PI: 6.9292 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 297 | 342 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ k + a++L +Av+YIk+Lq XP_011090494.1 297 SIAERVRRTKISERMRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 342 689*********************7....467*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.18 | 291 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-17 | 294 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-13 | 295 | 346 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-15 | 296 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 297 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-14 | 297 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MSRFQQQQQQ QFPQNMQTGG AGLTRYRSAP SSYFSSFLNA TASDGGFGAE DFEQLFSPNV 60 TTLQSQRKSQ PQQQLRRQQS NDFSSVMYQN PNSDAANSAT GSSYTRQLGD TVLNRGAAPV 120 KMEGGGDGSS NLIRHSSSPA GLFDDINIEN EFGAMRDYGN FGAGSLANAE ASFSSTSRFK 180 TETRFSSRNS SITPGDGQFD QDRGNDGDYI PGFPMNPWDL SDDFLKGLVD NDSKTFPKAN 240 DSDDQNNEGG NRSTTPLSRH LSLPTSSAEL SAMEKLLQDS VPCKIRAKRG CATHPRSIAE 300 RVRRTKISER MRKLQELVPN MEKQTNTADM LDLAVDYIKD LQRQVQTLSD RHVRCSCSPG 360 TKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090494.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ073367 | 2e-35 | KJ073367.1 Sesamum indicum clone TilSSR_44568 microsatellite Sesame_44568 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090494.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A2G9GI90 | 1e-124 | A0A2G9GI90_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00568.1.p | 1e-110 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 6e-61 | bHLH family protein |