PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089889.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YC | ||||||||
Protein Properties | Length: 231aa MW: 26727 Da PI: 10.2444 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 32.8 | 1.5e-10 | 128 | 216 | 11 | 99 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e++ + + ++P+ r+ +i+k+++ +is ea l+ +a e f+ + ++ + +++ + ++++v++ + fdfl d +p++ XP_011089889.1 128 EEKRENALYRFPMNRVSRIIKSENSDLRISQEAVFLINRASEKFLQLFCREAYACTFLDRKNYTAYNHLSSVVSKRKRFDFLSDFIPEK 216 5555666779***************9******************765555677777777777778999******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 1.8E-11 | 137 | 200 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 8.38E-15 | 138 | 214 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.0E-19 | 138 | 215 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAKKQVPAER TRKKNNSKIH IKSKSKNKSR NFTTQNKSRN KIRKTANDDA SSEETEVLVV 60 PSSSTESQND EVVGSSEEAE EDDVSERSPS DEDEKEEKKK PKSIKKKGKR KDVKNKGKRR 120 SRKAAEEEEK RENALYRFPM NRVSRIIKSE NSDLRISQEA VFLINRASEK FLQLFCREAY 180 ACTFLDRKNY TAYNHLSSVV SKRKRFDFLS DFIPEKLKAE DALAENPEAE K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 119 | KKKGKRKDVKNKGKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089889.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089889.1 | 1e-164 | protein MNN4 isoform X1 | ||||
TrEMBL | A0A2G9IAE2 | 6e-88 | A0A2G9IAE2_9LAMI; DNA-directed DNA polymerase | ||||
STRING | Migut.N02608.1.p | 2e-61 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9304 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-30 | nuclear factor Y, subunit C10 |