PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011088147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 356aa MW: 39425.9 Da PI: 8.3207 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.4e-13 | 174 | 221 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L +l+P + kK++Ka++L A++Y+k+Lq XP_011088147.1 174 QDHILAERKRREKLSQRFIALSTLVPGL-----KKMDKASVLGDAIKYMKQLQ 221 56999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.126 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.1E-11 | 174 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-18 | 175 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-17 | 175 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.99E-13 | 176 | 225 | No hit | No description |
SMART | SM00353 | 3.2E-15 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEISSFRTLA DLGMEDPLFF QQWSVDPLDE LSSVSIASAF GGDFHHSYTS QQAPAAQLGF 60 KRAPEPSPAG ENKPLKQLKT TTVAWNNSCK PENISSSPPP SSTVNLGFNN ISTITNSVVG 120 MVKPKEETWS SSSTITFPSE SIVSQASFGN QNYVLKPCQG AKRISTTTRL AQAQDHILAE 180 RKRREKLSQR FIALSTLVPG LKKMDKASVL GDAIKYMKQL QDKVKSLEEQ TKKRTMESVV 240 FVKKYEVHNS GDHAENSSSD ESFSNGPVIT EQLPEIEARF CNKDVLISIH CEKRKGVLEK 300 TVAEIEKLHL SVVNSSVMSF GESALNITVI AQKDEDFTMN MKELVKNLRA TLKVFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-14 | 175 | 224 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 175 | 224 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 175 | 224 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 175 | 224 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 175 | 224 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 175 | 224 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 175 | 224 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 175 | 224 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 184 | ERKRRE |
2 | 180 | 185 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011088147.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088147.1 | 0.0 | transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 4e-62 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A2G9GHL6 | 1e-152 | A0A2G9GHL6_9LAMI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400013074 | 1e-125 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1760 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-64 | bHLH family protein |