PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086824.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family RAV
Protein Properties Length: 349aa    MW: 40523.5 Da    PI: 8.3017
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.58e-095298254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    ++kGV    ++g W A+I+       +  r++lg+f ++ +Aa a++ a+ kl+
  XP_011086824.1 52 RFKGVV-PQQNGHWGAQIYA------NhHRVWLGTFKSEIDAAMAYDSAAIKLR 98
                    578885.556899****999......44**********99************98 PP
2B384.21.1e-26172273188
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f+k+ltpsdv+k++rlv+pk++a +h               g +   +++l ++d++ + W+++++y+k+s+++v+t+GW++Fvk+++L+++D++
  XP_011086824.1 172 FQKELTPSDVGKLNRLVIPKRYAVKHfpnvpdpsdysldiaGRV--DEVQLEFYDRQMNLWKFRYCYWKSSQSFVFTRGWNRFVKEKRLRANDTI 264
                     99*************************99999998888875433..6789********************************************* PP

                     EEE.E-SSS CS
              B3  81 vFk.ldgrs 88 
                      F+ +++r+
  XP_011086824.1 265 AFYmYESRD 273
                     **9433333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-1452108IPR016177DNA-binding domain
CDDcd000186.01E-2152109No hitNo description
SMARTSM003801.7E-1852113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-1652107IPR001471AP2/ERF domain
PROSITE profilePS5103216.46352107IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.6E-31167273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-26169272IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-23171277No hitNo description
SMARTSM010194.5E-19172280IPR003340B3 DNA binding domain
PfamPF023621.0E-23172271IPR003340B3 DNA binding domain
PROSITE profilePS5086312.055172290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKDELQYSFR LRMEEEMLSM ISHAKLNMNE ESSDSNCSIY VTNACKRSRV ERFKGVVPQQ  60
NGHWGAQIYA NHHRVWLGTF KSEIDAAMAY DSAAIKLRSG DTHRNFPWTN ISIQEPKFQS  120
HFTTDVVLNM IRDGSYPAKF ADFLRSQRGE IEIGLNLSSF HGDGQFSCNL LFQKELTPSD  180
VGKLNRLVIP KRYAVKHFPN VPDPSDYSLD IAGRVDEVQL EFYDRQMNLW KFRYCYWKSS  240
QSFVFTRGWN RFVKEKRLRA NDTIAFYMYE SRDGRRFGQS FLVIDVASKD ESRNDNNTKM  300
ELGRVTNNSD EVKQDKVENG NHNSFVEILT LQAPSSDTKG FRLFGVQID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2817127313107DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086824.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P56e-97RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2Z7CBN51e-157A0A2Z7CBN5_9LAMI; Uncharacterized protein
STRINGVIT_11s0037g00010.t011e-131(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-99RAV family protein