PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086604.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TALE
Protein Properties Length: 329aa    MW: 37683.2 Da    PI: 5.0563
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-09256305955
                     HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     ke +++L e  +   k +yp+++++  LAk++gL+++q+ +WF N+R ++
  XP_011086604.1 256 KEATQTLLEWWNshcKWPYPTEADKIALAKSTGLDQKQINNWFINKRKRQ 305
                     566666666666333469*****************************885 PP
2ELK28.63.3e-10226246222
             ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                     LK+ Llr Y+++++sLk EFs
  XP_011086604.1 226 LKDTLLRRYGSHISSLKLEFS 246
                     9*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.4E-2295139IPR005540KNOX1
PfamPF037905.1E-2297137IPR005540KNOX1
SMARTSM012569.5E-21145196IPR005541KNOX2
PfamPF037915.8E-22149194IPR005541KNOX2
PROSITE profilePS512139.446225245IPR005539ELK domain
PfamPF037891.1E-7225246IPR005539ELK domain
SMARTSM011882.2E-5225246IPR005539ELK domain
PROSITE profilePS5007112.762245308IPR001356Homeobox domain
SuperFamilySSF466894.02E-19246319IPR009057Homeodomain-like
SMARTSM003891.2E-13247312IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-27250308IPR009057Homeodomain-like
CDDcd000861.89E-12257309No hitNo description
PfamPF059208.1E-18265304IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDEMYGLNSV SDDYSEKGLM SPENLMIPAD QYYQYHHYHS MFPSGDHRQL IPVFGSEELG  60
SRCSGISLDH QSGTSVNVQN QQREGEGDDQ EGSSVMIKAK IASHPSYPKL LDAYIDCQKV  120
GAPPEMVYLL DEIRREKDLS RQDSVSMCLG VDPELDHFME TYCAILVKYK LDLSRPFDEA  180
TSFLNNIEAQ LFDLRNDNGA WSSDEELSRG DIEIQDAKMK SEDQQLKDTL LRRYGSHISS  240
LKLEFSKKKK KGKLPKEATQ TLLEWWNSHC KWPYPTEADK IALAKSTGLD QKQINNWFIN  300
KRKRQWIKSP ESMQLAVTDS FSGHFSTED
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086604.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086604.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-112KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2G9HN801e-155A0A2G9HN80_9LAMI; Transcription factor MEIS1
STRINGVIT_01s0127g00210.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-105KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]