PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011086152.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 469aa MW: 51434 Da PI: 5.7746

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011086152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	359	396	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_011086152.1 359 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 396 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	347	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-11	357	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.02E-6	357	401	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-8	361	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MAEDFQGGVC GGNWWNPQRN LFGSSPCASA INDMGSFGWL QNHDLMMDVS TARSISDDSA 60 CSAASDGASS VLIQDVQKPQ QPTGDGNMPM FASTTDDWNQ DLLHDHSGRS EDDYSRMLQE 120 AAGLNYRLTT TDVVDKCPDQ NHKNWSAKNF CEDSSINPFK QVNNQSFPLE PQPSNSLTSS 180 TQCVPTNSQG LSTTFPLMNS ASYSYSTSSL LQTLFDTDSD QPHEQSLLDN QATNYSSYPN 240 HRINSTEFLP SLTKAPTTSK PSLAKQQPAN HLPFTNNTSF WNAMAAASGA NVLPSTQPRF 300 LPPPMINSAK SNLPNISAKH HKEEDPKDLA SAVKKFSNEP SFKRPRIETP SPLPTFKVRK 360 EKLGDRITAL QQLVSPFGKT DTASVLHEAI EYIKFLHDQV SVLSTPYLKN ATPPLQRCPQ 420 AGDKNKDQEG PIQDLKSRGL CLVPISSTFP VAAETTADFW TPTFGGSFR

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MAEDFQGGVC GGNWWNPQRN LFGSSPCASA INDMGSFGWL QNHDLMMDVS TARSISDDSA  60
CSAASDGASS VLIQDVQKPQ QPTGDGNMPM FASTTDDWNQ DLLHDHSGRS EDDYSRMLQE  120
AAGLNYRLTT TDVVDKCPDQ NHKNWSAKNF CEDSSINPFK QVNNQSFPLE PQPSNSLTSS  180
TQCVPTNSQG LSTTFPLMNS ASYSYSTSSL LQTLFDTDSD QPHEQSLLDN QATNYSSYPN  240
HRINSTEFLP SLTKAPTTSK PSLAKQQPAN HLPFTNNTSF WNAMAAASGA NVLPSTQPRF  300
LPPPMINSAK SNLPNISAKH HKEEDPKDLA SAVKKFSNEP SFKRPRIETP SPLPTFKVRK  360
EKLGDRITAL QQLVSPFGKT DTASVLHEAI EYIKFLHDQV SVLSTPYLKN ATPPLQRCPQ  420
AGDKNKDQEG PIQDLKSRGL CLVPISSTFP VAAETTADFW TPTFGGSFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011086152.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086152.1	0.0	transcription factor bHLH112
TrEMBL	D7SSM5	1e-147	D7SSM5_VITVI; Uncharacterized protein
STRING	VIT_00s0274g00070.t01	1e-147	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	3e-57	bHLH family protein