PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011085928.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 699aa MW: 78887.8 Da PI: 7.0979 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.7e-19 | 22 | 77 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++++++q+++Le++++++++p++++r++L+++lgL+++q+k+WFqN+R++ k XP_011085928.1 22 KKQYHRHSTQQIQQLEAFYKECPHPDKNQRQQLSRELGLDQKQIKFWFQNKRTQIK 77 688899**********************************************9877 PP | |||||||
2 | START | 141.5 | 8.6e-45 | 218 | 436 | 4 | 206 |
HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla... 77 +a++elv + ++ep+Wvk + + + +k + e +++sg v m++ l e lld++ +W+ ++ XP_011085928.1 218 ISAMDELVELLRVNEPVWVKAPsdgryllH---------RDSYDKLfpkpnhfktasARFESSKDSGEVSMAAIHLIEMLLDVN-KWKDMFStiv 302 5799******************65543333.........4444333444445677999**************************.********** PP .EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 78 .kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 ka t+ev+++g g l+lm+ +l lsplv+ R+f f+Ry+rql+ +wv vdvS d ++ + +++ R+ +lpSg++ie++sng+s+vtw+ XP_011085928.1 303 tKARTIEVLDTGslgGLLHLMYEKLHILSPLVApREFFFIRYCRQLNLNTWVMVDVSYDFIKELQ-DAPPTRSWKLPSGCMIEDMSNGKSTVTWI 396 ********************************99***************************9999.999************************** PP E-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ehv +++++ h l+r lv ++a gak+w tlqr ce+ XP_011085928.1 397 EHVQVDDKSLtHRLYRDLVCGCQAYGAKRWITTLQRMCER 436 ******99988***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-18 | 9 | 80 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 9 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-17 | 21 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.62E-17 | 22 | 80 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 22 | 77 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.858 | 206 | 439 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.3E-29 | 208 | 437 | No hit | No description |
CDD | cd08875 | 2.39E-97 | 210 | 435 | No hit | No description |
SMART | SM00234 | 4.9E-31 | 215 | 436 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-37 | 218 | 436 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.6E-8 | 274 | 402 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.12E-14 | 459 | 686 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MDSSYGGNGS GEEETSNSQK GKKQYHRHST QQIQQLEAFY KECPHPDKNQ RQQLSRELGL 60 DQKQIKFWFQ NKRTQIKAQN ERADNNALRA ENERIHCENL AMQEALKNII CPACNGSGLG 120 EEEKHHNLQR LRMENARLKE EHERTINFFS NYMGNSTTPL PGVDSHMNIH GKHFLGERMG 180 ITPLDLEHMP RNSENTISPH WSSGIQEAEK SIIIETTISA MDELVELLRV NEPVWVKAPS 240 DGRYLLHRDS YDKLFPKPNH FKTASARFES SKDSGEVSMA AIHLIEMLLD VNKWKDMFST 300 IVTKARTIEV LDTGSLGGLL HLMYEKLHIL SPLVAPREFF FIRYCRQLNL NTWVMVDVSY 360 DFIKELQDAP PTRSWKLPSG CMIEDMSNGK STVTWIEHVQ VDDKSLTHRL YRDLVCGCQA 420 YGAKRWITTL QRMCERFAFS MGLTTTHKHE LEGVIDSLEG RRNLMKLSHR MMNNFCEALS 480 MSDKLDFPHL SEFKNSGVRV SLRKSNGLGQ PDGFIVSAAT SLWLPVSNEN LFNFFKDEKK 540 RVQWDVLSSG NPVNAVAHIS TGTHPGNCIS IIQQPFVPKE NNMLMLQESS IDPLGAIMIY 600 APIDLQAIIS VVNGEDTMRI PILPSGYVIS SDGRANKGMG ASSSSSSNSS SGSLLTVAFQ 660 ILVCHSTLTK QLNMESVATV HTLISSTIQK IKAALDYPD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011085928.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085930.1 | 0.0 | homeobox-leucine zipper protein ROC8 isoform X1 | ||||
TrEMBL | A0A022QU91 | 0.0 | A0A022QU91_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H02245.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2490 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |