PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011085350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 699aa MW: 77665 Da PI: 6.656 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 45 | 100 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lg++ qVk+WFqN+R+++k XP_011085350.1 45 RKRYHRHTPRQIQEMEAFFKECPHPDDRQRKELSSELGMQPLQVKFWFQNKRTQMK 100 789999***********************************************999 PP | |||||||
2 | START | 175.3 | 3.7e-55 | 224 | 446 | 1 | 205 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 e+a +a++e+++ a++++p+Wv s + +n++e+l++f++ v ++ ea+r+s+vv m ++++ e+l+d+ +W++ + +a+ XP_011085350.1 224 EVAVAATEEVIRIAQVGDPLWVPSMdrnaTLLNEEEYLRSFSR--VfdlkldgFKCEASRESVVVAMSAPKVIEILMDVE-KWSNVFSgvvsRAK 315 57899********************999999**********55..6679*9**************************999.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 ++ issg +alq+m+ae+ ++splvp R+++f+R+++q l++++w++vdvS+d + + +++v ++++pSg++i++++ng+skvtw+ XP_011085350.1 316 HMQLISSGvgenynEALQVMNAEFHVPSPLVPtRESYFLRFCKQhLTDDTWTVVDVSLDGLHSAT--PQLVACRRRPSGCVIQDMPNGYSKVTWM 408 ***********************************************************999975..8*************************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 ehv++++ +h+++++l+ gla+gak+wva l+ + + XP_011085350.1 409 EHVEVEDGGVHNIYKPLITAGLAFGAKRWVAILDAHSQ 446 **********************************9977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 29 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.36E-19 | 31 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.455 | 42 | 102 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-19 | 43 | 106 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.22E-18 | 45 | 103 | No hit | No description |
Pfam | PF00046 | 7.1E-17 | 45 | 100 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 77 | 100 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 37.272 | 215 | 450 | IPR002913 | START domain |
CDD | cd08875 | 4.12E-102 | 221 | 446 | No hit | No description |
SuperFamily | SSF55961 | 5.04E-29 | 221 | 446 | No hit | No description |
Pfam | PF01852 | 9.1E-46 | 224 | 446 | IPR002913 | START domain |
SMART | SM00234 | 8.0E-44 | 224 | 447 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.87E-16 | 463 | 688 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MVERQSFDMM NSNMSEEDDV RRTRGEEINS DSSNSNSIED QRPKRKRYHR HTPRQIQEME 60 AFFKECPHPD DRQRKELSSE LGMQPLQVKF WFQNKRTQMK TQHEHQENTQ LRSENEKLRA 120 ENMRYREALS NASCPTCGGP TPMAEASFHQ HQLRMENARL REEIDHISAV ATNYVGRPFA 180 NPTEAPSAST LASFKRTCRA TDLGRPAMDN AGQDVDRYRL MAIEVAVAAT EEVIRIAQVG 240 DPLWVPSMDR NATLLNEEEY LRSFSRVFDL KLDGFKCEAS RESVVVAMSA PKVIEILMDV 300 EKWSNVFSGV VSRAKHMQLI SSGVGENYNE ALQVMNAEFH VPSPLVPTRE SYFLRFCKQH 360 LTDDTWTVVD VSLDGLHSAT PQLVACRRRP SGCVIQDMPN GYSKVTWMEH VEVEDGGVHN 420 IYKPLITAGL AFGAKRWVAI LDAHSQRLQR AAAPKADVTC LEGWKSILKL GERMVTRFCS 480 GVNASTGNSW TTLSGNGSEN VRVMTRNNMD DLSMPVGLHL TIATSFWLPI PPKKVFDFLR 540 DPHTRNKWDM LSNGGDVEEM MQIVSGKEIG NSVAIYQAKS ATSRQTTLLE SRTDPTASYV 600 VYAPIDMVCL NAILGGGDPS SIPLLPSGFA ILPDGPTGSQ GRGMAAEADS GGSLLTVALQ 660 VLVDPSPNAK VSLGSITVAN NLISCTVDKI KNALIPKSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011085350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020552079.1 | 0.0 | homeobox-leucine zipper protein ROC1-like isoform X2 | ||||
Swissprot | Q6ZAR0 | 0.0 | ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1 | ||||
TrEMBL | A0A2G9GLU1 | 0.0 | A0A2G9GLU1_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H01063.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Publications ? help Back to Top | |||
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