PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082585.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 421aa    MW: 46796.7 Da    PI: 8.7856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082585.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.5e-0579101123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F r  nL+ H r H
  XP_011082585.1  79 FICEICNKGFQRDQNLQLHRRGH 101
                     89*******************88 PP
2zf-C2H212.50.00046155177123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_011082585.1 155 WKCEKCSKIYAVQSDWKAHSKTC 177
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.1E-678101No hitNo description
SMARTSM003550.02279101IPR015880Zinc finger, C2H2-like
PfamPF121714.9E-579101IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.84579101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355260120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.1E-6150175No hitNo description
SMARTSM00355170155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MFPAVMSNSN PVSEEASISS AGPRVQDFGS LNQLLHKSTS SNHHQPLKTK KKRNLPGNPD  60
PDAEVIALSP KTLLATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NSKENKKRAY  120
VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSAATHSI FANNIANPHS FHFNPQYPLP  240
PPPPPPPSFL PFSSHNRHFP NPWDPPPPQS PNPTSHPQDQ VHIKNEALHI PLSSSSPPLY  300
QERSLMTSPA LGTLQVSSGA QLPPLSATAL LQKAAAVGHV SSTMAQLDMQ MTAAAGWQKN  360
DRFTRDFLGL AGEQCGGNGN VRELLHFTPY DDDDDDQSLL KHQGFGYAET CTQTAWGNCN  420
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36151215367Zinc finger protein JACKDAW
5b3h_F1e-36151215367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082585.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082586.10.0protein indeterminate-domain 12
SwissprotO227591e-122IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLB9GSI61e-162B9GSI6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04880.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-114indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]