PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011082019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | CO-like | ||||||||
Protein Properties | Length: 339aa MW: 37206.5 Da PI: 5.1595 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21 | 6.9e-07 | 12 | 44 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ ++ fC+ ++ +lC C + H XP_011082019.1 12 KLCDSCKTASATVFCRADSAFLCLACDAKVHAA 44 68*************************999954 PP | |||||||
2 | zf-B_box | 27.1 | 8.5e-09 | 54 | 98 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ +++ C+ + lC++C +H+ H++ p XP_011082019.1 54 VWVCEVCEQAPASVTCKADAAALCATCDRDIHSAnplarrHERLP 98 689*****************************6688888898877 PP | |||||||
3 | CCT | 70.1 | 5.6e-24 | 276 | 320 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e XP_011082019.1 276 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSE 320 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.4E-11 | 9 | 56 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.48 | 9 | 56 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.2E-6 | 12 | 51 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.51E-8 | 13 | 56 | No hit | No description |
PROSITE profile | PS50119 | 10.793 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.1E-7 | 54 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.09E-8 | 55 | 99 | No hit | No description |
SMART | SM00336 | 5.5E-10 | 57 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.9E-18 | 276 | 318 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.787 | 276 | 318 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MGGDQTWSLT AKLCDSCKTA SATVFCRADS AFLCLACDAK VHAANKLASR HARVWVCEVC 60 EQAPASVTCK ADAAALCATC DRDIHSANPL ARRHERLPVV PFYDAASATK SSPSASAAEE 120 FSEEEAEAAS WLLPDPNSKS EEESESPEYK SAEYLFSDMD PYLDLELISG EQKPHHVVIN 180 EQKQYSSDGV VPVQNKNEYG SGQYPGPVVD GFPTYEVDYP GTKPFMYNFT TQSISQSVSS 240 SSLDVGVVPD HNAMADVSDT LAKTDAVPIP VSGMDREARV LRYREKRKNR KFEKTIRYAS 300 RKAYAETRPR IKGRFAKRSE LEIDSLIAPD ASYGVVPSF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011082019.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082019.1 | 0.0 | zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 1e-102 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A2G9FY22 | 0.0 | A0A2G9FY22_9LAMI; GATA-4/5/6 transcription factor | ||||
STRING | XP_009590370.1 | 1e-172 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009618115.1 | 1e-172 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 3e-92 | CONSTANS-like 4 |