PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080879.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 371aa    MW: 42637.8 Da    PI: 4.439
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.59.8e-15140224286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++e+  L++a  ++  + +r++l+   W+ev++k+ +e ++er+ +qC+++++ l+k+ykk+k   ++r  ++  ++ yf++++
  XP_011080879.1 140 WTEHETFILLDAWGDRFLKQGRKSLRSEEWQEVAEKVsQESKIERTDTQCRNRLDTLKKKYKKEKMKLGER-GGAAIEWLYFKKMD 224
                     *************************************88999***************************98.555669*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-5139204IPR009057Homeodomain-like
PfamPF138372.5E-21139226No hitNo description
PROSITE profilePS500906.33140197IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MMDDEDDVGY HPSPYAINCE KFPVYPQKIR NSYVEDDNGD GDGDGDEKGI GNAEDEDEDE  60
DEDEDEGHGV QRIGEDEYEY GDEDDNDDDD YGDLQSQPKK RKLKTLFSNY EFAPRVPAPS  120
AAAALVTKPS YGGRNPLTDW TEHETFILLD AWGDRFLKQG RKSLRSEEWQ EVAEKVSQES  180
KIERTDTQCR NRLDTLKKKY KKEKMKLGER GGAAIEWLYF KKMDTLLSSQ PQQSGLSCAG  240
EYAFMDPKVD LNRSNGLDEM RDSPGNSEFA EHEEDESNGL PTKKMNNRKL RGSRASFKLL  300
ADSFKKFSDM YEKIENSKRK QMLELEKMRM DFHRDLELQK RQILERAQAE IAKIWQGHDE  360
DNIVSAENAS G
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080879.10.0trihelix transcription factor ASIL2
TrEMBLA0A2P6RWQ21e-137A0A2P6RWQ2_ROSCH; Putative transcription factor MYB family
STRINGXP_009609888.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.18e-57Trihelix family protein