PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011080654.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | B3 | ||||||||
Protein Properties | Length: 820aa MW: 90628 Da PI: 6.5577 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.1 | 3.8e-19 | 302 | 401 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+l+ sd+++ grlvlpk +ae++ +++ e++ ++++d +g++W++++++ +++s++yvl+ G + ++++gD+v+F++++ +++ XP_011080654.1 302 FEKILSASDAGRIGRLVLPKACAEAYfpPINQSEGIPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQVQAGDTVTFSRID-PGGQ 394 99**************************777788999***************9989999999***9.********************887.8888 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ XP_011080654.1 395 LVIGCRK 401 8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.14E-19 | 299 | 400 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-27 | 299 | 407 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.21E-23 | 300 | 401 | No hit | No description |
SMART | SM01019 | 4.6E-21 | 302 | 402 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.659 | 302 | 403 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-16 | 302 | 401 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.046 | 525 | 575 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 2.7E-12 | 532 | 572 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 820 aa Download sequence Send to blast |
MGSKNCMNEA CRGTTTSEWK KGWSLKSGGF ATLCYTCGSA YENSLFCETF HSEDSGWREC 60 RICGKRIHCG CIASRYLHEY LDFGGIGCIS CAKRLEIHAV QSIQIPGDTP NGTFATNAIR 120 DVRPVVENQI DDDKFSTERL LQLTKAIGSN DVSSALEQLK PEESMFKTRQ SSKRLLNLAQ 180 QCSSSALFKT DNSRPKEGIK DIYESLPQPS LNFSLTTPLG SPSSGLPFPG AVVEGSEQSK 240 GSFQQGQRTR HVLPKPPKPS PTAVSETNKG TQLLLPRYWP KITDQELQQL SGDLKSTIVP 300 LFEKILSASD AGRIGRLVLP KACAEAYFPP INQSEGIPIR IQDIKGKEWT FQFRFWPNNN 360 SRMYVLEGVT PCIQNMQVQA GDTVTFSRID PGGQLVIGCR KATNSTDVQE AQTPSVVNGD 420 SPGETSFSGV TDDPLSNGGR TSDDSLQRHM PISEKKKARN IKNKRLLMPS DDAMELRITW 480 EEAQELLRPS PTXXXXVVMV EDHEFEEFEE PPIFGKRTIF TSRPSGEQEQ LAQCDSCSKW 540 RRLPVHALLS AKWTCSDNIW DSKRSSCAAP EDINPRDLES FISIYKDSKK RKISDNKVPR 600 EGEPSGLDAL ATAAVLGDNI SDIAESSVGA TTRHPRHRPG CTCIVCIQPP SGKGKHEPMC 660 KCNVCLTVRR RFKTLMMRKK KRQSEREAEL AQGKDKASVK VGLEREDIAG HALLNMSHHT 720 DNERNQNGNQ TELEETNKGQ LDLNCDPHRE DDILAEAAGM SLTTLMNAAT LPLDMYLGQN 780 GVPVTGPCLV SRTAGENEEN AADEGFTSGR VDQENNREDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-71 | 280 | 409 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 668 | 679 | RRRFKTLMMRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011080654.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080654.2 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1 | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A2G9GBQ2 | 0.0 | A0A2G9GBQ2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00818.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |