PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080270.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 361aa    MW: 40698.1 Da    PI: 6.1256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-05199218120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_011080270.1 199 FSCPLCFKTFNRYNNMQMHM 218
                     89*****************9 PP
2zf-C2H214.50.0001283305123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_011080270.1 283 FMCRKCGKAFAVRGDWRTHEKNC 305
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61199221IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66199226IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5199218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-6265303No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5279303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549283303IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808283303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTDPYSNYFN NGYSWFNLNH FNPPSSSSSS SSSSIPSSYS PYYNFNFLTN SNSLFFTHDY  60
ESSPPSPPLK EALPLLSLTP IRDQESSSAA AMEVDKNMVM MKLSATEEEE DQDQDQEEED  120
ESLSVTLNLG LSTPCSFPAD SDLILSSRPS SSTDTGNNYS NNKEELVTVA SSGYPISPLN  180
KGQYWIPTPA QILIGPTQFS CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM  240
LRLPCYCCAP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT  300
HEKNCGKLWY CTCGSDFKHK RSLKDHIKAF GNGHSAYGID CFDQEEDEPA SEIEQDNESS  360
Q
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080270.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-139ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2I4DJY31e-170A0A2I4DJY3_JUGRE; zinc finger protein WIP2-like
STRINGXP_008384541.11e-163(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-132C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]