PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080018.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 501aa    MW: 55088.7 Da    PI: 6.0447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080018.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11355401455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  XP_011080018.1 355 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIACITDLQ 401
                     799***********************66......*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.5E-4449228IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.643351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17354421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.75E-13354405No hitNo description
PfamPF000107.4E-9355401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16355421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-14357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.803436501IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGSKIWLNEE DKVVVESVLG SEATEYLAWS ASNNVLSEFA ASGGDLGVQQ ALCKIVEGSD  60
WTYAIYWHVS KSRSGKSALI WGDGHCREPK EGEDENGHDS EDGKPTEGDC GKWVLQKIHA  120
CFGGLEDDNV ASKLDRVSNV EMFYLTSMYF VFPFDKPSVP SQSFNSGRSI WVSDVKSCLE  180
RYQSRSHLAK LAHFETVVFV PTKSGVVEIG STKSIPEDQS IIQSAKSIVG KLNKTQTKAF  240
RKIFGQDLSL GGSRSGPISI SFAPKVEEDS GFSSESYDFQ ATGSTQVYGS SSNGHRGDDG  300
EAKLFPHMNH IGGLSSKAII SNMEQNKDDL IIHCDDRRPR KRGRKPANGR EEALNHVEAE  360
RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAIACITDL QTKIRVLEAE KGILNDQQNQ  420
CAVQDIDFHE RLEDTVVRVS CALDSHPVSR VVKALKENQV EAQEAAISIT ESGEVVHTFS  480
IQTQAGGAEQ LKDKLAAALL K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-25349424277Transcription factor MYC2
5gnj_B2e-25349424277Transcription factor MYC2
5gnj_E2e-25349424277Transcription factor MYC2
5gnj_F2e-25349424277Transcription factor MYC2
5gnj_G2e-25349424277Transcription factor MYC2
5gnj_I2e-25349424277Transcription factor MYC2
5gnj_M2e-25349424277Transcription factor MYC2
5gnj_N2e-25349424277Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336344RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080018.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080018.10.0transcription factor bHLH3-like
RefseqXP_011080019.10.0transcription factor bHLH3-like
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A482JHU70.0A0A482JHU7_SALMI; BHLH3b
STRINGMigut.D00401.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-140bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]