PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079838.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 672aa    MW: 74615.7 Da    PI: 6.0664
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079838.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.4e-14461507455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  XP_011079838.1 461 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 507
                     6889**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.4E-5511194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.117457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11461506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-18461526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-19461525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-14461511No hitNo description
SMARTSM003531.6E-17463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MVGPAPGKSR LQSMLQAAVQ AVHWTYSLFW QLCPQQRILV WGDGYYNGAI KTRKTVQPTE  60
VTTEEATLQR SQQLREPYDS LSAPPPVADH PRRPSAALSP EDLTESEWFY LMCLSFSFPP  120
GLGLPGKAYA KRQHIWLTRA YEADSKIFSR AILAKSAKIQ TVVCIPLLDG VVELGTTQRV  180
EEDIRLIQRV KSFFTDAQNP NPPRPVLSEH STSNPPTSSD PPPASTVPPH DDPTLDNDHD  240
DDDHDDDDTT DQDSDSDAET GRADTLTLPA QPQNAAPVIT KADLPSELME LDMSEDIRLG  300
SPDDGSNNLD PDFHLHAISR PQTSSEERHS RGDLLGRREA MHRWLRQKEP ITSLQPPQSG  360
LDALTQDDNH YSATVSAILE NQSNRWSTSF STPISSATSA FSTWSSTAPF ASSSNRRNLL  420
LDGASQWTLK YILFTVPLLY TKSPETSARG GGAPPDELGP NHVLAERRRR EKLNERFIIL  480
RSLVPFVTKM DKASILGDTI EYVKQLRKRI QELEAPLRQM EAERNSTNYK KQNYSNLKEQ  540
RSSAGGSLGR EKRKMMRIVE DGERGGGGGG GAKSKVVESP SRTVGEEVVQ VEVSIIESDA  600
LVEIQCLHKE GLLLDVMRVL RGLRIEVTTV QSSISNGVFA AEFRAKVREN VNGRKANIME  660
VKRSINQVIL PC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A4e-23819049227Transcription factor MYC3
4ywc_A4e-23819049227Transcription factor MYC3
4ywc_B4e-23819049227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1465470ERRRRE
2466471RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079838.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0599917e-58KJ059991.1 Sesamum indicum clone TilSSR_31192 microsatellite Sesame_31192 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079838.10.0truncated basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A061DRT40.0A0A061DRT4_THECC; BHLH-like DNA binding protein
STRINGEOX947960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-95bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]