PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011079713.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 525aa MW: 57370.2 Da PI: 8.7285

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011079713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_011079713.1 79 FVCEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	15.5	4.8e-05	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ XP_011079713.1 155 WKCDKCSKKYAVQSDWKAHQKTC 177 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.58E-8	78	101	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	79	101	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.4E-5	79	101	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	120	150	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-5	143	176	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.58E-8	150	176	No hit	No description
SMART	SM00355	94	155	175	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MSNITGDEGS FSSDEVQQQQ QQQQNNLSLT STDTSNTTNA STSHHHSQPK KKRNLPGTPD 60 PTAEVVALSP TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR ATTEVRKRVY 120 ICPEPSCVHH NPARALGDLT GIKKHYSRKH GEKKWKCDKC SKKYAVQSDW KAHQKTCGTR 180 EYKCDCGTIF SRRDSFITHR AFCDALAEEN SKVNQGVMGS LGPNMQAQMA DLMSTMPIST 240 NTNTSIALSE FTNPLKSLPQ ELLPIPFKPM NMFSTSSGTL FASPRNGPSS SSGLQLSSNS 300 SPSGYNYQQD NKNLGQYAGP SHMSATALLQ KAAQMGATAS NSMNSPMMQK SFVSSMAGPD 360 QAPGPGPGPR PISNVHSFDT FHAQSEPPSG FSGGFATQLL QKSPVQEMAQ LFESGGAGGS 420 AVSDMVMYGG MLMGGDGSSA ARFLKNVMEV QEESDQNCGL GQRKNNIMAR TPTRIGAGDD 480 MTTVDFLGVG GSRPQNEHYK RLEMEGMNEQ RMQVMQNPFH QQDFS

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MSNITGDEGS FSSDEVQQQQ QQQQNNLSLT STDTSNTTNA STSHHHSQPK KKRNLPGTPD  60
PTAEVVALSP TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR ATTEVRKRVY  120
ICPEPSCVHH NPARALGDLT GIKKHYSRKH GEKKWKCDKC SKKYAVQSDW KAHQKTCGTR  180
EYKCDCGTIF SRRDSFITHR AFCDALAEEN SKVNQGVMGS LGPNMQAQMA DLMSTMPIST  240
NTNTSIALSE FTNPLKSLPQ ELLPIPFKPM NMFSTSSGTL FASPRNGPSS SSGLQLSSNS  300
SPSGYNYQQD NKNLGQYAGP SHMSATALLQ KAAQMGATAS NSMNSPMMQK SFVSSMAGPD  360
QAPGPGPGPR PISNVHSFDT FHAQSEPPSG FSGGFATQLL QKSPVQEMAQ LFESGGAGGS  420
AVSDMVMYGG MLMGGDGSSA ARFLKNVMEV QEESDQNCGL GQRKNNIMAR TPTRIGAGDD  480
MTTVDFLGVG GSRPQNEHYK RLEMEGMNEQ RMQVMQNPFH QQDFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	151	214	3	66	Zinc finger protein JACKDAW
5b3h_F	3e-34	151	214	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011079713.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ060267	9e-60	KJ060267.1 Sesamum indicum clone TilSSR_31468 microsatellite Sesame_31468 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011079713.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-114	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A3N7FC77	0.0	A0A3N7FC77_POPTR; Uncharacterized protein
STRING	POPTR_0002s20950.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-101	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]