PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011079319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | CO-like | ||||||||
Protein Properties | Length: 368aa MW: 39884.4 Da PI: 6.6631 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.6 | 4e-06 | 26 | 64 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htv 39 + C+ +++ + lfC+ + ++C C ++ H + H++ XP_011079319.1 26 KPCDYCSSAAALLFCHAHSAFMCMACDSKVHASddkHER 64 68*******9*********************87888876 PP | |||||||
2 | zf-B_box | 23.4 | 1.2e-07 | 65 | 109 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++ C+ + lC +C +H+ H++v XP_011079319.1 65 VWMCEVCEHAPAAVTCKADAAALCVSCDRDIHSAnplarrHERVA 109 689*****************************6688888898875 PP | |||||||
3 | CCT | 71.6 | 1.9e-24 | 296 | 339 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++ XP_011079319.1 296 REARVLRYKEKRKNRKFDKTIRYASRKAYAETRPRIKGRFAKRT 339 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.67 | 23 | 56 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.243 | 23 | 67 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.31E-7 | 27 | 67 | No hit | No description |
PROSITE profile | PS50119 | 10.224 | 63 | 110 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-14 | 63 | 110 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.6E-6 | 65 | 109 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.61E-8 | 66 | 108 | No hit | No description |
PROSITE profile | PS51017 | 16.658 | 296 | 338 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.7E-18 | 296 | 338 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MGISHDGAGV ARPPKSFTPG WNVAAKPCDY CSSAAALLFC HAHSAFMCMA CDSKVHASDD 60 KHERVWMCEV CEHAPAAVTC KADAAALCVS CDRDIHSANP LARRHERVAV VPFYETAESM 120 LMTSSGAANL SVPVSGSASD MFAAPPSDGD SWASTNPIFA TKLPADTPVD VKSLEFFFSD 180 SDQFLDFDNY QISSQTYGGD SVVPVQTTIK PSVPVQSTHQ FSPENRFEID FTRSRIASYN 240 SNYTTPSLSH SVSSSSMDVG IVPEGSSMSE ISSRTMSTSS FDLSANPAPQ PAGLDREARV 300 LRYKEKRKNR KFDKTIRYAS RKAYAETRPR IKGRFAKRTD SESDIDGIFS SGGGSFFGDA 360 RYGVVPSF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011079319.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079319.1 | 0.0 | zinc finger protein CONSTANS-LIKE 5-like | ||||
TrEMBL | A0A2G9HFV0 | 1e-175 | A0A2G9HFV0_9LAMI; GATA-4/5/6 transcription factor | ||||
STRING | Migut.K00262.1.p | 1e-147 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 9e-86 | CONSTANS-like 5 |