PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | CO-like | ||||||||
Protein Properties | Length: 335aa MW: 36754 Da PI: 5.3062 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.8 | 3.9e-07 | 11 | 43 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ +++ fC+ ++ +lC C ++ H XP_011078988.1 11 KLCDSCKTAPATVFCRADSAFLCLPCDSKVHAA 43 68**************************99954 PP | |||||||
2 | zf-B_box | 27 | 9e-09 | 53 | 98 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC++C +H+ H++ p+ XP_011078988.1 53 VWVCEVCEQAPAAVTCKADAAALCPTCDRDIHSAnplarrHERLPI 98 689*****************************66888888998876 PP | |||||||
3 | CCT | 70.1 | 5.6e-24 | 272 | 316 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e XP_011078988.1 272 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSE 316 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 9.4E-13 | 8 | 55 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.438 | 8 | 55 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.6E-6 | 11 | 50 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.59E-9 | 12 | 55 | No hit | No description |
PROSITE profile | PS50119 | 10.58 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.3E-7 | 53 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.16E-8 | 54 | 98 | No hit | No description |
SMART | SM00336 | 3.5E-9 | 56 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.787 | 272 | 314 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.9E-18 | 272 | 314 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGGESWSLTA KLCDSCKTAP ATVFCRADSA FLCLPCDSKV HAANKLASRH ARVWVCEVCE 60 QAPAAVTCKA DAAALCPTCD RDIHSANPLA RRHERLPIVP FYDSASATKS SSSAAAAEEV 120 SEEEAEAASW LLPDPNNKLD EDAGSPEYKS AEYLFSDMDP YLDLDLISGE QKPNSHEKKE 180 YSSDRVVPVQ NKNEYGSGQY PGPVVDGFPT YDVDYPGSKP FMYNFTSQSI SQSVSCSSLD 240 VGVVPDHNAM ADVSDTFVKT EAIPTPVSGV DREARVLRYR EKRKNRKFEK TIRYASRKAY 300 AETRPRIKGR FAKRSELEVD SLISGDASYG VVPTF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078988.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078988.1 | 0.0 | zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 1e-102 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A2G9H9E3 | 0.0 | A0A2G9H9E3_9LAMI; GATA-4/5/6 transcription factor | ||||
STRING | PGSC0003DMT400075520 | 1e-167 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 8e-97 | CONSTANS-like 4 |