PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YB | ||||||||
Protein Properties | Length: 228aa MW: 25795.8 Da PI: 6.2835 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 178.6 | 5.7e-56 | 67 | 162 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+eas+kcqrekrktingdd+lwa+ tlGfedyv+plk+yl+kyre+ege XP_011078767.1 67 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDILWAIMTLGFEDYVNPLKLYLTKYREIEGE 161 89*******************************************************************************************99 PP NF-YB 97 k 97 k XP_011078767.1 162 K 162 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.2E-52 | 62 | 177 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.35E-40 | 69 | 177 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-28 | 72 | 136 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.6E-19 | 100 | 118 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 103 | 119 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.6E-19 | 119 | 137 | No hit | No description |
PRINTS | PR00615 | 1.6E-19 | 138 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MKRERDNEDE GPQIGQNSPF RISLESACPN TTNINDHNST LSATHSTNAN AGGIRATATT 60 NNNISNKEQD RFLPIANVGR IMKKVIPGNG KISKDAKETV QECVSEFISF VTGEASEKCQ 120 REKRKTINGD DILWAIMTLG FEDYVNPLKL YLTKYREIEG EKLNVPKQQR PEQHEQKQPD 180 MPYNSVYSST NMMSQPSFVS GDPPFPLPFT QTSIPKILPQ QNQFDWNW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 3e-45 | 64 | 157 | 1 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 3e-45 | 64 | 157 | 1 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078767.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078767.1 | 1e-171 | nuclear transcription factor Y subunit B-7 | ||||
Swissprot | Q9SIT9 | 9e-62 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | A0A2Z7ABS0 | 1e-103 | A0A2Z7ABS0_9LAMI; Nuclear transcription factor Y subunit B-7-like | ||||
STRING | PGSC0003DMT400043176 | 8e-83 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 4e-64 | nuclear factor Y, subunit B7 |
Publications ? help Back to Top | |||
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