PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011077234.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 354aa MW: 39357.3 Da PI: 9.5751 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.3 | 9e-14 | 56 | 104 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g XP_011077234.1 56 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 104 689***9788.8*********3.....5*************************98 PP | |||||||
2 | B3 | 103.9 | 8.3e-33 | 183 | 282 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l led+ g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++ +++ XP_011077234.1 183 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGNNSKGVLLNLEDKGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDIVSFQRSTIPDKQ 277 89****************************778889***************************************************75447777 PP .EEEE CS B3 92 lvvkv 96 l++ + XP_011077234.1 278 LYIDW 282 77665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.33E-25 | 56 | 111 | No hit | No description |
Pfam | PF00847 | 7.4E-9 | 56 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-17 | 56 | 112 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.178 | 57 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-30 | 57 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-20 | 57 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-42 | 174 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-30 | 181 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.67E-31 | 182 | 271 | No hit | No description |
SMART | SM01019 | 2.0E-26 | 183 | 286 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-29 | 183 | 282 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.002 | 183 | 286 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MDASSADEST TSDSLSTTPS PIKPPEISLC RMGSGTSVII DAENGVEAES RKLPSSRFKG 60 VVPQPNGRWG AQIYEKHQRV WLGTFNEEEE AARAYDTAAQ RFRGRDAVTN FKPLAEKEDE 120 IEAAFLSSHS KAEIVDMLRK HTYNDELEQS RRNYAGNKMA KDGLFSLSSG GGDRALKARE 180 QLFEKAVTPS DVGKLNRLVI PKQHAEKHFP LQNGNNSKGV LLNLEDKGGK VWRFRYSYWN 240 SSQSYVLTKG WSRFVKEKNL RAGDIVSFQR STIPDKQLYI DWKPRNNGSN AAAIGLSGLV 300 QPVQMVRLFG VNIFEAPRNG GDAAAIDSCS GKRLREMEIL GLECSKKQRV IDAL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-56 | 180 | 297 | 11 | 128 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011077234.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077234.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9C6M5 | 1e-152 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A2G9I1N7 | 0.0 | A0A2G9I1N7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.E00306.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-149 | RAV family protein |