PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011077024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | AP2 | ||||||||
Protein Properties | Length: 430aa MW: 46704.8 Da PI: 7.4988 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.6e-17 | 162 | 211 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_011077024.1 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.34E-16 | 162 | 220 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-9 | 162 | 211 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.43E-11 | 163 | 221 | No hit | No description |
SMART | SM00380 | 1.0E-32 | 163 | 225 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.78 | 163 | 219 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-17 | 163 | 219 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.36E-12 | 254 | 299 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-6 | 254 | 298 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.6E-12 | 255 | 303 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MLDLNVDAVF SVDSTSCDDE ADRRNTGTAD SVASTTTSTT NNAALAAADE VDCNSSTGKN 60 PLSTLNFSIL NKNVMMMDDD VNNDVANNTS SELQLFPMGA SSASPPPSAV KAKYWLNLSV 120 PEVSGSGPAV ELGICRAEMS ANNQMPQPQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI 180 WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GIDADINFTI SDYDEDMKQM KNLTKEEFVH 240 ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAIQCNGR EAVTNFEPSN 300 YDREMNLSSR DEGSSSNLDL NLGISLSSDG PQQNDTTTNM HFPRSSSELP DAKRLKETAA 360 TRISGEAVAL PGLSNWPWKM PSHGVVAPVP LFSSSAASSG FSSATSPYLN SFMSLTSAAQ 420 FPATASHSLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011077024.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077024.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
Swissprot | Q9SK03 | 1e-94 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A2G9HGU5 | 0.0 | A0A2G9HGU5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F02018.1.p | 1e-175 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 6e-94 | related to AP2.7 |