PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011075911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 211aa MW: 24901.5 Da PI: 4.7998 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.8e-19 | 21 | 72 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ft+eq++ Le+ Fe++ ++ +++ e A+ lgL+ rqV +WFqNrRa++k XP_011075911.1 21 RRFTNEQIRSLETIFEMETKLEPRKKHEVARDLGLQPRQVAIWFQNRRARWK 72 68*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.9 | 6.7e-39 | 20 | 110 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+++eq+++LE+ Fe+e+kLep++K+e+ar+Lglqprqva+WFqnrRAR+k+kqlE++y++Lk++yd l + ++L++e+++L+ +l+e XP_011075911.1 20 ARRFTNEQIRSLETIFEMETKLEPRKKHEVARDLGLQPRQVAIWFQNRRARWKSKQLEQEYKVLKTNYDGLCMQFDHLKREKQSLQMQLQE 110 69*************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.71E-18 | 7 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-16 | 17 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.39E-13 | 18 | 75 | No hit | No description |
Pfam | PF00046 | 1.2E-16 | 21 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-19 | 21 | 81 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.5E-5 | 45 | 54 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.5E-5 | 54 | 70 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-13 | 74 | 114 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MESPHEENPH RSTRKTSKNA RRFTNEQIRS LETIFEMETK LEPRKKHEVA RDLGLQPRQV 60 AIWFQNRRAR WKSKQLEQEY KVLKTNYDGL CMQFDHLKRE KQSLQMQLQE LTDLVKNLDN 120 VGISDGDAEL KEDPNSSNEG MDHNDAMYTD DEETVTKYFK ETEEQEPLSW GTEQVEISHL 180 ESPETWCNDL SSGSLFDQSS CKSNWWESLK I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 74 | RRARWKSKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011075911.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075911.1 | 1e-157 | homeobox-leucine zipper protein ATHB-12-like isoform X2 | ||||
TrEMBL | A0A2G9HZK1 | 2e-75 | A0A2G9HZK1_9LAMI; Uncharacterized protein | ||||
STRING | XP_009803292.1 | 2e-49 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 5e-41 | homeobox 7 |