PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070915.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family YABBY
Protein Properties Length: 182aa    MW: 20104.7 Da    PI: 8.658
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY166.81.5e-5161643163
           YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                      ++s e+ Cy++CnfCnt+lav +P + l+ +vtv+CGhC++l  ++  +a+  +++   ++d++   +l ++++   +++k n ++ +s+s++ 
  XP_011070915.1   6 QVQSFEHFCYIRCNFCNTVLAVGIPCKKLLDTVTVKCGHCSNLSFLSTCTAKpPIQPQCFNIDHHHASTLFHHHQGLCSEFKINGQSVSSSSSTS 100
                     567889***********************************986654444332677777788888888888888888888887776665555554 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                     ss   + +++ ++p++p v++PPek+ r Psaynrf+keeiqrika++P+i hreafsaaaknWa +
  XP_011070915.1 101 SS---TISTQPSSPKAPYVVKPPEKKHRLPSAYNRFMKEEIQRIKAADPEIPHREAFSAAAKNWARY 164
                     44...456778899***************************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-5410164IPR006780YABBY protein
SuperFamilySSF470953.27E-8107162IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.3E-4117163IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDEQQQVQSF EHFCYIRCNF CNTVLAVGIP CKKLLDTVTV KCGHCSNLSF LSTCTAKPPI  60
QPQCFNIDHH HASTLFHHHQ GLCSEFKING QSVSSSSSTS SSTISTQPSS PKAPYVVKPP  120
EKKHRLPSAY NRFMKEEIQR IKAADPEIPH REAFSAAAKN WARYIPNTPQ GSASTSGSNI  180
NA
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4513992e-55AY451399.1 Antirrhinum majus YABBY-like transcription factor CRABS CLAW-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070915.21e-134protein CRABS CLAW
SwissprotQ76EJ02e-57YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A075M8X68e-75A0A075M8X6_PETAX; CRC2
STRINGPGSC0003DMT4000728931e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-55YABBY family protein