PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011069877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | CO-like | ||||||||
Protein Properties | Length: 378aa MW: 41317.6 Da PI: 7.0926 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22 | 3.3e-07 | 26 | 63 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 + C+ +++ + lfC+ +++++C C + H + H++ XP_011069877.1 26 KPCDYCKSAAALLFCRADSVFMCIACDAKVHDNmkHER 63 57*******9*********************7788986 PP | |||||||
2 | zf-B_box | 25.4 | 3e-08 | 64 | 108 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++ C+ + lC +C +H+ H++v XP_011069877.1 64 VWMCEVCEQAPAAVTCKADAAALCVTCDRDIHSAnplagrHERVA 108 689*****************************6688888898775 PP | |||||||
3 | CCT | 70.7 | 3.6e-24 | 306 | 349 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_011069877.1 306 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 349 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.5E-5 | 23 | 66 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-5 | 26 | 63 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.09E-8 | 27 | 66 | No hit | No description |
PROSITE profile | PS50119 | 9.556 | 28 | 66 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.968 | 62 | 109 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.4E-6 | 64 | 108 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.00E-8 | 65 | 107 | No hit | No description |
SMART | SM00336 | 4.1E-9 | 67 | 109 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 3.9E-18 | 306 | 348 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.638 | 306 | 348 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MGIAQDGGGA ARPKFFPAAA LNVVAKPCDY CKSAAALLFC RADSVFMCIA CDAKVHDNMK 60 HERVWMCEVC EQAPAAVTCK ADAAALCVTC DRDIHSANPL AGRHERVAVV PFYETAESVV 120 MKSAAAALLV PAGDCNSNIF VADHPSQPDR KLDTNGYIPD SWIPTSPIIT AKLPAEAPDL 180 KSMELLFQDS DQFIDFENYQ ISSQPYSDSV VPVQTTIKPP APARLTRDHS SENRFEIDFT 240 RSNINAYNSS YTTASLSHSV SSSSMDVGVV PDGSALSEIS YPFSRNINSS LDLNGNQGSQ 300 VVGMDREARV LRYKEKRKNR KFEKTIRYAS RKAYAETRPR IKGRFAKRTD AESDIDRIFG 360 AGAANFIADA RYGVVPSF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011069877.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069877.1 | 0.0 | zinc finger protein CONSTANS-LIKE 5-like | ||||
Swissprot | Q9FHH8 | 6e-95 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A2G9HFV0 | 0.0 | A0A2G9HFV0_9LAMI; GATA-4/5/6 transcription factor | ||||
STRING | Migut.K00262.1.p | 1e-147 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 7e-89 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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