PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943836.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 317aa    MW: 34789.6 Da    PI: 7.6647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943836.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11146193355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  Av+Y+k+L+
  XP_010943836.1 146 QEHIIAERKRREKLSQRFIALSAVIPGL-----KKVDKASVLGDAVKYVKELE 193
                     6799************************.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.523143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16147205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15147210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.75E-11148197No hitNo description
SMARTSM003531.1E-12149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.681250317IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDESNLIYEC DMTSFNQFTP QRVAPALVGG FQQPLSSESY TSYPPFHPAE TPSLVGFIER  60
PKKMQKINSW NSRTTEQNQT LVPHASSADS LLFHNPNSPN DVFGRAAASQ EEMRALVSNG  120
SAQNYETLAQ QGSKMTNMGS MLSQAQEHII AERKRREKLS QRFIALSAVI PGLKKVDKAS  180
VLGDAVKYVK ELEARVKTLE DQNAKRTVES MVLVKKSKLS ADADGSSSSG CPAEKPLPEI  240
EAMLSEKTVL IRIHCDNHKG VLGRLVSEIE KVHLTVTNAS VMPFPSSSIH ITLTAKVEEE  300
FSMAVGDLVR KLNSALS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14148196957Transcription factor MYC2
5gnj_B6e-14148196957Transcription factor MYC2
5gnj_E6e-14148196957Transcription factor MYC2
5gnj_F6e-14148196957Transcription factor MYC2
5gnj_G6e-14148196957Transcription factor MYC2
5gnj_I6e-14148196957Transcription factor MYC2
5gnj_M6e-14148196957Transcription factor MYC2
5gnj_N6e-14148196957Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156ERKRRE
2152157RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943830.20.0transcription factor bHLH18-like
SwissprotQ9T0722e-56BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2H3ZN281e-159A0A2H3ZN28_PHODC; transcription factor bHLH18-like
STRINGXP_008787834.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-55bHLH family protein