PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943406.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 346aa    MW: 38559.1 Da    PI: 5.9096
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943406.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092713062055
                     HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +k +yps++e+  LA+++gL+ +q+ +WF N+R ++
  XP_010943406.1 271 YKWPYPSETEKVALAESTGLDPKQINNWFINQRKRH 306
                     4679*****************************885 PP
2ELK35.62.1e-12226247122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++Ll+KYsgyL+sL+qE+s
  XP_010943406.1 226 ELKQHLLKKYSGYLSSLRQELS 247
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.9E-2384128IPR005540KNOX1
PfamPF037901.4E-2385126IPR005540KNOX1
SMARTSM012562.5E-26132183IPR005541KNOX2
PfamPF037911.2E-23136182IPR005541KNOX2
SMARTSM011885.6E-7226247IPR005539ELK domain
PfamPF037891.1E-9226247IPR005539ELK domain
PROSITE profilePS5121311.348226246IPR005539ELK domain
PROSITE profilePS5007112.86246309IPR001356Homeobox domain
SuperFamilySSF466898.55E-20247322IPR009057Homeodomain-like
SMARTSM003892.4E-13248313IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-27251311IPR009057Homeodomain-like
CDDcd000863.79E-12258310No hitNo description
PfamPF059203.2E-16266305IPR008422Homeobox KN domain
PROSITE patternPS000270284307IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEEFSHLGGG NSRGSFIYLS SSSVAAATTT TASPTPPPSS AAYGRSFYPT ALLQNPSTPT  60
LKTEAGSSQH QSHKPGEMSQ SDIEAIKAKI ISHPQYSSLL EAYMDCQKVG APPEVVARLS  120
ATARELEARS SCRREASTDP ELDQFMEAYC DMLVKYREEL ARPLQEATDF LQKVESQFNA  180
LTNGASARFL SSDEKCEGVG SSEEDQDASG GESELPEIDP RAEDKELKQH LLKKYSGYLS  240
SLRQELSKKK KKGKLPKDAR QKLLNWWELH YKWPYPSETE KVALAESTGL DPKQINNWFI  300
NQRKRHWKPS EDMQFVVMDG FHPQNAAAAL FMEGQFMGDG MYRLGP
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943406.10.0homeotic protein knotted-1
SwissprotQ413301e-146KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A2H3YHS30.0A0A2H3YHS3_PHODC; homeobox protein rough sheath 1-like
STRINGXP_008798922.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-117KNOTTED-like from Arabidopsis thaliana