PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941334.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 603aa    MW: 67043.5 Da    PI: 5.9135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941334.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12348391755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +Er+RR+++N+++  Lr+l+Pk      +K++ a+iL  A+eY+ +Lq
  XP_010941334.1 348 VAERKRRKKLNDRLYALRSLVPKI-----TKMDRASILGDAIEYVMELQ 391
                     68*********************7.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-1611159IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.16E-14338395No hitNo description
PROSITE profilePS5088815.663341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17344407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-16347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10348391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-18348406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MKTLPQSTMV EGLRSLVGTN GWDYCILWTL SQDQRFLEWM GCCCSGAEAQ NGGALFTSVS  60
ASKLPCRDVM FRHPRTRICD ALEELPSSIP LDSSSGLRAQ ALITKHPIWQ TKLPDSTFSH  120
EETVGAKTRA LVPLPGGLVE LFVSKHMAED PQTIEFVMSQ CTSTPYEQAE AMNIANNSGD  180
PINPQQGQNS NLTTSADDLQ PWIPPQPMAI NPPNLPWDPS DQSRLYGSPL SLFSGPKNTD  240
IFFDGSTADS YLSNKPPPAP LGSTIDNSVA ADIATAFQQS YVTTAHNLHS VAESAVSREV  300
AGHDKESIKM EAAGRADSGS EGSEQVDEDE DHRAVGRSGK RHHSKNLVAE RKRRKKLNDR  360
LYALRSLVPK ITKMDRASIL GDAIEYVMEL QRQVKDLQDE LEETNPEDDD GKQNGSNNNS  420
NCQMEIPNQN GMMNQGLEHD DCLKTSRMIA TDSSNPMKQS QDPGHDDKGN QMEPQVEVRP  480
VEGNEFFLRV LCEYKQGGFA RLMEAMSSLG LEVTNANVTK FRTLVLNIFR VERRDNEVVQ  540
AEQVRNSLLE VTRDPNAGWP EHGQVKANGG GDYHHHHHGN HCHQHHQLNS HHHHHLHYHQ  600
QQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349356ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029124461.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A2H3ZCV50.0A0A2H3ZCV5_PHODC; transcription factor ABORTED MICROSPORES
STRINGXP_008811619.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-127bHLH family protein