PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939971.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 698aa    MW: 76796.8 Da    PI: 7.0539
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939971.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-201871356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + +++t++q++eLe++F+ +++p++++r +L++ lgL+ rq+k+WFqNrR+++k
  XP_010939971.1 18 RCHRHTPKQIQELEAMFKVCPHPDEKQRMQLSRDLGLEARQIKFWFQNRRTQMK 71
                    33689**********************************************998 PP
2START177.77.1e-562124342206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     la +a++el+++++ +ep+Wvk+     e +  +++ ++f++ +        ++ea+r+s+vv+m++  lv  ++d + +W e ++    k +t+
  XP_010939971.1 212 LATRAMEELIRLVQTDEPLWVKVGhdgrEVLHLETYERIFPRPGHqfkyadLHTEASRDSTVVIMNSIALVDMFIDAS-KWAELFPtivsKTKTI 305
                     57899*******************66666666666666665544499*******************************.****9999999***** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      g+l lm+ elq+lsp+ p R+f f+Ry+ q ++g w+ivdvSvd+ ++++      R+++lpSg+li++++ng+sk+twvehv
  XP_010939971.1 306 EVLSTGiagsknGTLILMYEELQVLSPVIPtREFCFLRYCHQIQQGLWAIVDVSVDHHRENQL---ASRSRRLPSGCLIQDMPNGYSKITWVEHV 397
                     ************************************************************996...889999*********************** PP

                     E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     + +++   h+l+r lv sg+a+ga++w++tlqr ce+
  XP_010939971.1 398 EIDKKNQtHQLYRNLVDSGMAFGAQRWLSTLQRMCER 434
                     **987666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.96E-19773IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-211177IPR009057Homeodomain-like
PROSITE profilePS5007117.1031373IPR001356Homeobox domain
SMARTSM003891.5E-201477IPR001356Homeobox domain
CDDcd000869.52E-191574No hitNo description
PfamPF000463.9E-181871IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084850.969202437IPR002913START domain
SuperFamilySSF559614.29E-39204435No hitNo description
CDDcd088756.48E-116206433No hitNo description
SMARTSM002348.9E-48211434IPR002913START domain
PfamPF018523.9E-48212434IPR002913START domain
Gene3DG3DSA:3.30.530.203.4E-8264433IPR023393START-like domain
SuperFamilySSF559612.75E-15455671No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MDSGDEPETP EQQGRKKRCH RHTPKQIQEL EAMFKVCPHP DEKQRMQLSR DLGLEARQIK  60
FWFQNRRTQM KSQHERAGNC ALRAENDKIR CENIAMKEAL KNAICPSCGG PPTNEDSYVD  120
EQKLRMENAR LKDELDRVSS FASKYLGRPV TQLPSVQPMA MSSLDLSMGG YSNPGPSSSL  180
DLDLLSGGSS TVMPFPFSAA VSEIEKPLMV DLATRAMEEL IRLVQTDEPL WVKVGHDGRE  240
VLHLETYERI FPRPGHQFKY ADLHTEASRD STVVIMNSIA LVDMFIDASK WAELFPTIVS  300
KTKTIEVLST GIAGSKNGTL ILMYEELQVL SPVIPTREFC FLRYCHQIQQ GLWAIVDVSV  360
DHHRENQLAS RSRRLPSGCL IQDMPNGYSK ITWVEHVEID KKNQTHQLYR NLVDSGMAFG  420
AQRWLSTLQR MCERFACLTV AGISSRDLGG VIPGPDGKRS MMKLAQRMAN NFCASITASN  480
NHGHKWTNPS GLTDVGVRLT IYRSSGPASL PTGLILGAAT SIWLPVPSQR VFSFLKDEKT  540
RAEWDVLSNG NSVQEVVRIT NGSHPGNCIS LLRALNPAQS NMLILQESCI DASGSLVVYA  600
SIDLPSLNDV MSGEDPSKIP LLPSGFAVLP DGQPMGGGAS TSSNPMGVAS GSLVTVLFQL  660
LASSSPSAKL DIESVTTVTQ LISTTVQQMK AALNCPGI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939971.10.0homeobox-leucine zipper protein ROC8 isoform X1
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2H3XS180.0A0A2H3XS18_PHODC; homeobox-leucine zipper protein ROC8-like isoform X1
STRINGXP_008787891.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11