PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939913.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 537aa    MW: 58404.3 Da    PI: 6.6989
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939913.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1841.1e-561575312374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetsekn......sseelaalkl..... 83 
                     ++lL  cA+a+++ + +++++lL  l+elas +gd+++Rlaay ++ L ++l++   ++++a+  p++ + + +      s+e      l     
  XP_010939913.1 157 EHLLNPCATAIEAANYSRVHHLLYVLRELASTSGDANHRLAAYGLRSLTRHLSS--AGIAAAVgvPAQGSGPADdspsfaSTEPK----Lfrsai 245
                     699***************************************************..55555553155555444444555322222....123357 PP

            GRAS  84 ..fsevsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLa 166
                       f+evsP++ + + + N  Il+av  +     + +H++D ++s+G+QWp+Ll+aL+  p+g p  +RiT+ g++++      +       + L 
  XP_010939913.1 246 ikFHEVSPWFALPNSLGNASILQAVTLDsnqrpRPLHVVDVGVSHGIQWPTLLDALSRHPGGVPaLVRITVAGAATPPgpfsAAPLGYDFSSHLL 340
                     89**********************986655566778************************8877589*******8877888666667899***** PP

            GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFlerfl 258
                     ++A++++++++++       ++le++++++ + E+l+V+ ++++ +        ++ r+++L+ v++l+P++vv++e +   a  ++++F ++f 
  XP_010939913.1 341 RYAKSIDLNLRIDR-----ADTLEPQTMSLARSETLVVCAQFRVGHGG------PDDRTAFLRSVRELNPDLVVLAEVDgggAGETDGRFPAEFG 424
                     **********9996.....79*********************888776......556789******************9654555788******* PP

            GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                     +     ++++ds++a +    + r   Er++++ e+  ++    a+     e  e+Wr r+   GF++  ++e+a +  ++llrk++++ ++   
  XP_010939913.1 425 RRSGLLWKFLDSTSAAF----KGRDCAERRVVEGEAARILEWGAAA----DEGCERWRGRMVGLGFREEWFGEDALEAGRALLRKYDGN-WETRM 510
                     *************9986....8888888888888999999888887....89999********************************55.44444 PP

            GRAS 354 esgslv.lgWkdrpLvsvSaWr 374
                       g++v l Wk++++ ++S W+
  XP_010939913.1 511 -AGAAVgLWWKGHRVSFCSLWK 531
                     .455556**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.98130512IPR005202Transcription factor GRAS
PfamPF035143.7E-54157531IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MAFEEGPDFN LTTYHHSLLD WSEDSISFVP SFLDYPYTLH DAIAGYECWT RDQDQANLIH  60
TPPSTTPAVA PPTTSPPSLP QPEFSKKRKL PTSPTPLDKA AAHENRRRTV ADSGDEGDGV  120
SEEDAEIARK QGNGRKGERK GNGGNSGNGN KEVRWAEHLL NPCATAIEAA NYSRVHHLLY  180
VLRELASTSG DANHRLAAYG LRSLTRHLSS AGIAAAVGVP AQGSGPADDS PSFASTEPKL  240
FRSAIIKFHE VSPWFALPNS LGNASILQAV TLDSNQRPRP LHVVDVGVSH GIQWPTLLDA  300
LSRHPGGVPA LVRITVAGAA TPPGPFSAAP LGYDFSSHLL RYAKSIDLNL RIDRADTLEP  360
QTMSLARSET LVVCAQFRVG HGGPDDRTAF LRSVRELNPD LVVLAEVDGG GAGETDGRFP  420
AEFGRRSGLL WKFLDSTSAA FKGRDCAERR VVEGEAARIL EWGAAADEGC ERWRGRMVGL  480
GFREEWFGED ALEAGRALLR KYDGNWETRM AGAAVGLWWK GHRVSFCSLW KPHTRSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-2615453285474Protein SHORT-ROOT
5b3h_B2e-2615453231420Protein SHORT-ROOT
5b3h_E2e-2615453231420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939913.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A2H3YRK20.0A0A2H3YRK2_PHODC; nodulation-signaling pathway 1 protein-like
STRINGXP_008802452.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-112GRAS family protein