PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939305.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 353aa    MW: 39196.5 Da    PI: 6.4056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939305.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84.1e-13175222355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  Av+Y+k+Lq
  XP_010939305.1 175 QDHIIAERKRREKMSQRFIALSALIPGL-----KKMDKASVLGDAVKYLKQLQ 222
                     5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.656172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17176235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17176234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-11176222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.22E-14177226No hitNo description
SMARTSM003534.1E-15178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDTSVARWFS DMGMDDPSFL HQWDMDSLDQ FTAQQIAVSL GQHFQQSPSS ESYTSYPSFQ  60
PPASTTSNTF SCSSMDTKCV ERPKKVLKTS SWNSCTTEQN SSLAPDASSP CILSFGKPES  120
PRNQSGLYES LVGAVKPKEE MEILVPHGLK RSYGTMIEQG PKRMNMGARP TSNNQDHIIA  180
ERKRREKMSQ RFIALSALIP GLKKMDKASV LGDAVKYLKQ LQEKVKTLEE QNAKRTVESA  240
VVVKKSQLSS EDDGSCCDEN FEGFPSGESL PEIEAKMSEN SVLIKIHCEK RSGVLLMALS  300
EIEKLHLSVI NTSVIPFASS HLDITVVAQI DAEFSMTVQD LVKKLNSAFR QFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12176231863Transcription factor MYC2
5gnj_B1e-12176231863Transcription factor MYC2
5gnj_E1e-12176231863Transcription factor MYC2
5gnj_F1e-12176231863Transcription factor MYC2
5gnj_G1e-12176231863Transcription factor MYC2
5gnj_I1e-12176231863Transcription factor MYC2
5gnj_M1e-12176231863Transcription factor MYC2
5gnj_N1e-12176231863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185ERKRRE
2181186RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939305.10.0transcription factor bHLH18
RefseqXP_010939306.10.0transcription factor bHLH18
TrEMBLA0A2H3XMA80.0A0A2H3XMA8_PHODC; transcription factor bHLH18-like
STRINGXP_008785756.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-67bHLH family protein