PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938840.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family G2-like
Protein Properties Length: 326aa    MW: 34931.2 Da    PI: 6.9164
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938840.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.51.9e-30108161155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  XP_010938840.1 108 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 161
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-20105165IPR009057Homeodomain-like
PROSITE profilePS5129411.059105164IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-30107166IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-24109161IPR006447Myb domain, plants
PfamPF002491.3E-7111160IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MREEEEANWF ARWEEQLPSP EELMPLSQTL ITPDLALAFD IPTVRSNPNP NPSLHHHHPA  60
PSLHPPPPPP SSQPPPDFDS PDHLTTASSG GGAGGGGAGE EPARTLKRPR LVWTPQLHKR  120
FVDAVAHLGI KNAVPKTIMQ LMSVDGLTRE NVASHLQKYR LYLKRMQGLS SSGGGAGGGA  180
GGPISAADAA TDQLFASSSV PHHFLGRGPG PEPYMPFVPV AALQHHQQIT AAMQQQHQQQ  240
QYYQQRHMGH FGSPTGGGEG YDHGFLARTM PQPGMHRMVG PVAVGLVPPP PPSAPSAASY  300
VEDLESGSRR GGGERRMLTL FPTGED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-32108164157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938840.10.0transcription factor MYBC1-like
SwissprotO222103e-58MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A2H3Z9961e-148A0A2H3Z996_PHODC; transcription factor MYBC1-like
STRINGXP_008810350.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.12e-57G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]