PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010937395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 284aa MW: 32489.3 Da PI: 5.1549 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64.8 | 1.9e-20 | 30 | 112 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ e+ +Liea++e++ +l+rg+lk+++Weev++++ g++++ +qC++k+e+l+kry++ + + + s +pyfd+++ XP_010937395.1 30 WSHLETVHLIEAYEEKWYSLKRGQLKAHQWEEVAAAVatrcGFDGLSKTGTQCRHKIEKLRKRYRADRLRPNP------SAWPYFDRMD 112 ***********************************99766666799******************986666554......57*******8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.2E-22 | 28 | 114 | No hit | No description |
SMART | SM00595 | 2.6E-7 | 37 | 119 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 284 aa Download sequence Send to blast |
MTASGVAERH PGSPVLAAAA ARKPAPGQPW SHLETVHLIE AYEEKWYSLK RGQLKAHQWE 60 EVAAAVATRC GFDGLSKTGT QCRHKIEKLR KRYRADRLRP NPSAWPYFDR MDRMERGPLP 120 ISVRPPVPPV FADADAAAGD PSSEEEDEED DEEEEERTAS NTRSINGILR EGNWGFSRVS 180 RNPRSRKRRA FEEEEDDEEE EEQEEGVGAR GEALSKLAVV VRMFGEELVR MEKRRMEMLR 240 EVERDWMEME AKRAEMIMES QRFLVDTIAN AFSSLKKAKK SQDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937395.1 | 0.0 | uncharacterized protein LOC105056785 | ||||
TrEMBL | A0A426YZL6 | 2e-99 | A0A426YZL6_ENSVE; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P04170_001 | 7e-97 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10078 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44730.1 | 2e-25 | Trihelix family protein |